Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_C17
(933 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37) 50 2e-06
SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30) 50 2e-06
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 5e-06
SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0) 46 6e-05
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 44 2e-04
SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15) 38 0.009
SB_57663| Best HMM Match : UQ_con (HMM E-Value=0.24) 38 0.012
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0) 37 0.020
SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18) 35 0.082
SB_59790| Best HMM Match : VWA (HMM E-Value=0) 30 2.3
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05) 29 4.1
SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07) 29 5.4
SB_1955| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
Length = 190
Score = 50.4 bits (115), Expect = 2e-06
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Frame = +3
Query: 483 PVFHPNVDTCGLICLDIL----KDKWTALYDVRTVLLSIQSLLAEPNTQSPL 626
P++HPN+D+ G ICLD L K W ++ +VL +I L+AEPN PL
Sbjct: 37 PIYHPNIDSSGRICLDTLKMPPKGMWKPALNISSVLSTILILMAEPNPDDPL 88
>SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)
Length = 204
Score = 50.4 bits (115), Expect = 2e-06
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Frame = +3
Query: 483 PVFHPNVDTCGLICLDIL----KDKWTALYDVRTVLLSIQSLLAEPNTQSPL 626
P++HPN+D+ G ICLD L K W ++ +VL +I L+AEPN PL
Sbjct: 51 PIYHPNIDSSGRICLDTLKMPPKGMWKPALNISSVLSTILILMAEPNPDDPL 102
>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 49.2 bits (112), Expect = 5e-06
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Frame = +3
Query: 348 ENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLICL 527
E+L+KW + GP K P R L+ + ++HPNV G +C+
Sbjct: 360 EDLYKWEIMVVGPPGTYYEEGYFKASMVFPKEYPQRPPTLTFI-SDIWHPNVHKNGEVCI 418
Query: 528 DILKD-------------KWTALYDVRTVLLSIQSLLAEPNTQSPLN 629
IL + +W ++ V T++LS+ S+LAEPN +SP N
Sbjct: 419 SILHEPGEDKYGYEKADERWRPIHTVETIMLSVISMLAEPNDESPAN 465
>SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +3
Query: 486 VFHPNVDTCGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLNSSS 638
+FHPNV G IC++ LK W ++ VLL+++ LL PN +S LN +
Sbjct: 151 IFHPNVAKNGEICVNTLKKDWKPDLGIKQVLLTVKCLLIVPNPESALNEEA 201
>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 226
Score = 45.6 bits (103), Expect = 6e-05
Identities = 23/51 (45%), Positives = 29/51 (56%)
Frame = +3
Query: 483 PVFHPNVDTCGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLNSS 635
P +P G++CLDILKD W+ + VLLSI SLL + N PL S
Sbjct: 151 PSDYPFKPPKGMVCLDILKDSWSPALTISKVLLSICSLLTDCNPADPLVGS 201
Score = 29.5 bits (63), Expect = 4.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 394 TVYAGHKYKLSLEFPNSYPYAPP 462
+VY G + L + FP+ YP+ PP
Sbjct: 137 SVYEGGVFFLDIHFPSDYPFKPP 159
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 13/61 (21%)
Frame = +3
Query: 486 VFHPNVDTCGLICLDIL-------------KDKWTALYDVRTVLLSIQSLLAEPNTQSPL 626
++HPN+ G +C+ IL ++W +VRT+LLS+ SLL EPNT SP
Sbjct: 1197 MWHPNIYESGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPA 1256
Query: 627 N 629
N
Sbjct: 1257 N 1257
Score = 35.1 bits (77), Expect = 0.082
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 394 TVYAGHKYKLSLEFPNSYPYAPP 462
T+YAG +K + FP+ YPY+PP
Sbjct: 1167 TLYAGGYFKAHMSFPHDYPYSPP 1189
>SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15)
Length = 243
Score = 38.3 bits (85), Expect = 0.009
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 486 VFHPNVDTCGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLNS 632
++HPN+D +C+ +L D W A D+ ++ + L PN + PL+S
Sbjct: 77 IYHPNMDGYDGVCMSLLDD-WQASNDLEDLVQGLLFLFYNPNLEDPLSS 124
>SB_57663| Best HMM Match : UQ_con (HMM E-Value=0.24)
Length = 48
Score = 37.9 bits (84), Expect = 0.012
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 543 KWTALYDVRTVLLSIQSLLAEPNTQSPL 626
KW+ +RTVLLSIQ+LL+ PN PL
Sbjct: 2 KWSPALQIRTVLLSIQALLSAPNPDDPL 29
>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 145
Score = 37.1 bits (82), Expect = 0.020
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 486 VFHPNVDTCGLICLDILK-DKWTALYDVRTVLLSIQSLLAEPNTQSPLNS 632
++HPN+D G +CL I+ + W V+ ++ +L+ +P + PL +
Sbjct: 65 IYHPNIDEKGQVCLPIISPENWKPATKTEQVIQALLALVHDPEPEHPLRA 114
>SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18)
Length = 215
Score = 35.1 bits (77), Expect = 0.082
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 486 VFHPNVDTC-GLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLN 629
++HPN+D G +CL +L D W D+ ++ + L PN + PL+
Sbjct: 77 IYHPNMDLDDGSVCLSLLDD-WNESNDLEDLVQGLLFLFYNPNLEDPLS 124
>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
Length = 4151
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 247 NRVFTLLSWVRRRRVMWIDVLSHNILRKSNEHLLKIARDTNFSVKRR 107
N V+ + + VR R+ + V H ++R H LKI R KRR
Sbjct: 4073 NSVYEIKNGVRLRKTINRSVTHHKVIRHGGHHFLKILRHRLRRHKRR 4119
>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
Length = 200
Score = 29.5 bits (63), Expect = 4.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 394 TVYAGHKYKLSLEFPNSYPYAPP 462
+VY G + L + FP+ YP+ PP
Sbjct: 177 SVYEGGVFFLDIHFPSDYPFKPP 199
>SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)
Length = 181
Score = 29.1 bits (62), Expect = 5.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 394 TVYAGHKYKLSLEFPNSYPYAPP 462
+VY G + L + FP YP+ PP
Sbjct: 64 SVYEGGVFFLDIHFPTDYPFKPP 86
>SB_1955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 29.1 bits (62), Expect = 5.4
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +2
Query: 203 YASSSNPAKQSEDTIKLKDNHAVSKRLQKELMELMRCSDKGI 328
Y S S+P+K+ + K+ + +KR + +EL++CS++ +
Sbjct: 120 YDSLSSPSKKIGNKRKIDQENTDTKRFKLNKVELIQCSERSL 161
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,184,560
Number of Sequences: 59808
Number of extensions: 349856
Number of successful extensions: 957
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2717121828
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -