Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_C17
(933 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 71 1e-12
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 67 1e-11
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 67 1e-11
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 60 2e-09
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 58 7e-09
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 58 9e-09
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 58 9e-09
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 53 3e-07
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 51 1e-06
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 47 2e-05
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 47 2e-05
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 45 7e-05
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 45 7e-05
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 40 0.002
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 39 0.006
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 38 0.010
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 37 0.018
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 30 2.1
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 70.9 bits (166), Expect = 1e-12
Identities = 29/47 (61%), Positives = 37/47 (78%)
Frame = +3
Query: 486 VFHPNVDTCGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPL 626
++HPN+D G ICLDILKDKW+ +RTVLLSIQ+LL+ PN + PL
Sbjct: 76 IYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPEDPL 122
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 67.3 bits (157), Expect = 1e-11
Identities = 30/49 (61%), Positives = 36/49 (73%)
Frame = +3
Query: 486 VFHPNVDTCGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLNS 632
+FHPNV G ICLDIL+++W+ YDV +L SIQSLL EPN SP NS
Sbjct: 76 MFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANS 124
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 394 TVYAGHKYKLSLEFPNSYPYAPPVCQIYDSLF 489
T + +KLSLEF YP PP + +F
Sbjct: 46 TPFEDGTFKLSLEFTEEYPNKPPTVKFISKMF 77
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 67.3 bits (157), Expect = 1e-11
Identities = 30/49 (61%), Positives = 36/49 (73%)
Frame = +3
Query: 486 VFHPNVDTCGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLNS 632
+FHPNV G ICLDIL+++W+ YDV +L SIQSLL EPN SP NS
Sbjct: 76 MFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANS 124
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 394 TVYAGHKYKLSLEFPNSYPYAPPVCQIYDSLF 489
T + +KLSLEF YP PP + +F
Sbjct: 46 TPFEDGTFKLSLEFTEEYPNKPPTVKFISKMF 77
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 60.1 bits (139), Expect = 2e-09
Identities = 26/47 (55%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Frame = +3
Query: 486 VFHPNVDT-CGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSP 623
++HPN+ + G ICLDILKDKWTA +RTVLLS+Q++L P P
Sbjct: 108 IWHPNISSQTGTICLDILKDKWTASLTLRTVLLSLQAMLCSPEPSDP 154
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 394 TVYAGHKYKLSLEFPNSYPYAPPVCQIYDSLFFIQ 498
T YAG +++ ++ P YP+ PP ++ + +F I+
Sbjct: 63 TPYAGGTFEIKVDIPEHYPFEPP--KVTEIIFHIR 95
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 58.4 bits (135), Expect = 7e-09
Identities = 26/47 (55%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Frame = +3
Query: 486 VFHPNVDT-CGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSP 623
++HPNV + G+ICLDILKD+W A +RTVLLSIQ+L+ P + P
Sbjct: 79 IWHPNVSSQTGVICLDILKDQWAASLTLRTVLLSIQALMCTPEPKDP 125
Score = 30.7 bits (66), Expect = 1.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 394 TVYAGHKYKLSLEFPNSYPYAPP 462
T YAG + L ++ P+ YP++PP
Sbjct: 49 TPYAGGMFDLDIKIPDQYPFSPP 71
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 58.0 bits (134), Expect = 9e-09
Identities = 31/93 (33%), Positives = 47/93 (50%)
Frame = +3
Query: 348 ENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLICL 527
++LF W TI GP + P + ++ ++HPN+++ G ICL
Sbjct: 28 DDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFT-TRIYHPNINSNGSICL 86
Query: 528 DILKDKWTALYDVRTVLLSIQSLLAEPNTQSPL 626
DIL+ +W+ + VLLSI SLL +PN PL
Sbjct: 87 DILRSQWSPALTISKVLLSICSLLCDPNPDDPL 119
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 58.0 bits (134), Expect = 9e-09
Identities = 31/93 (33%), Positives = 47/93 (50%)
Frame = +3
Query: 348 ENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLICL 527
++LF W TI GP + P + ++ ++HPN+++ G ICL
Sbjct: 28 DDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFT-TRIYHPNINSNGSICL 86
Query: 528 DILKDKWTALYDVRTVLLSIQSLLAEPNTQSPL 626
DIL+ +W+ + VLLSI SLL +PN PL
Sbjct: 87 DILRSQWSPALTISKVLLSICSLLCDPNPDDPL 119
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 52.8 bits (121), Expect = 3e-07
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +3
Query: 486 VFHPNVDTC-GLICLDILKDKWTALYDVRTVL-LSIQSLLAEPNTQSPLNSSS 638
+FHPN+D G +CLD++ WTALYD+ + + LL PN PLN +
Sbjct: 75 IFHPNIDEASGTVCLDVINQAWTALYDLTNIFDTFLPQLLTYPNAADPLNGEA 127
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 50.8 bits (116), Expect = 1e-06
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 13/113 (11%)
Frame = +3
Query: 339 LXSENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGL 518
+ +N F+W I GP C + P+ + +FHPN+ G
Sbjct: 29 IDEDNFFEWECLITGPEETCFANGVFPARITFPQDYPLSPPKM-RFTCGIFHPNIYADGR 87
Query: 519 ICLDIL-------------KDKWTALYDVRTVLLSIQSLLAEPNTQSPLNSSS 638
+C+ IL ++W+ + + +LLS+ S+LAEPN +SP N S+
Sbjct: 88 VCISILHAPGDDPTGYELSNERWSPVQSIEKILLSVVSMLAEPNDESPANVSA 140
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +3
Query: 483 PVFHPNVDTCGLICLDILKDK--WTALYDVRTVLLSIQSLLAEPNTQSPLNSSSF 641
P+FHPNV G +CL +L + W ++ +L+ IQ LL PN + P + ++
Sbjct: 80 PLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAY 134
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +3
Query: 483 PVFHPNVDTCGLICLDILKDK--WTALYDVRTVLLSIQSLLAEPNTQSPLNSSSF 641
P+FHPNV G +CL +L + W ++ +L+ IQ LL PN + P + ++
Sbjct: 80 PLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAY 134
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 45.2 bits (102), Expect = 7e-05
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 13/61 (21%)
Frame = +3
Query: 486 VFHPNVDTCGLICLDILKD-------------KWTALYDVRTVLLSIQSLLAEPNTQSPL 626
++HPN+D G +C+ IL D +W ++ V T+LLS+ S+L +PN +SP
Sbjct: 76 IWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPA 135
Query: 627 N 629
N
Sbjct: 136 N 136
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 394 TVYAGHKYKLSLEFPNSYPYAPP 462
T+Y G +K L+FP YP PP
Sbjct: 46 TLYEGGFFKAILDFPRDYPQKPP 68
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 45.2 bits (102), Expect = 7e-05
Identities = 34/117 (29%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Frame = +3
Query: 318 IKEYQHSLXSENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHP 497
++ + + +NLF W I GP P + V+HP
Sbjct: 27 VEGFTIDVNEDNLFVWTVGIYGPPKTLYQGGYFKASIRFPSNYPYSPPSMKFT-TKVWHP 85
Query: 498 NVDTCGLICLDILK-------------DKWTALYDVRTVLLSIQSLLAEPNTQSPLN 629
NV G +C+ IL ++W VRT+LLS+ SLL EPNT SP N
Sbjct: 86 NVYENGDLCISILHSPIDDPQSGELACERWNPTQSVRTILLSVISLLNEPNTSSPAN 142
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +3
Query: 492 HPNVDTCGLICLDILKDKWTALYDVRTVLLSIQSLLA 602
HP++ + G ICL IL D WT V++V LSI S+L+
Sbjct: 82 HPHIYSNGHICLSILSDDWTPALSVQSVCLSILSMLS 118
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 38.7 bits (86), Expect = 0.006
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +3
Query: 486 VFHPNVD--TCGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLN 629
V+HPNVD TC L +L++ W + VLL++ LL EP+ P+N
Sbjct: 85 VYHPNVDPVTCELCSPMLLQENWKPETTMEDVLLNLIVLLNEPDLSRPVN 134
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 37.9 bits (84), Expect = 0.010
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 486 VFHPNVDTCGLICLDIL-KDKWTALYDVRTVLLSIQSLLAEPNTQSPLNS 632
++HPNVD G CL I+ + W V++++ SL+ EP P+ +
Sbjct: 74 IYHPNVDEEGKFCLPIVTAENWKPATKTEQVMMALLSLINEPEPSHPIRA 123
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 37.1 bits (82), Expect = 0.018
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +3
Query: 363 WIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLICLDIL-K 539
WI T+ GP + K+ I C P+ HPNVD G I L +L +
Sbjct: 71 WICTVPGPRGSPWEGGEYEVSVNFHKWPIIPPIC--EFKTPLHHPNVDLRGSIYLKMLEQ 128
Query: 540 DKWTALYDVRTVLLSIQSLLAEPNTQSPLN 629
+ W++ ++ +L I +LLA P+ N
Sbjct: 129 EHWSSETSLKKLLREISNLLATPDLTQAAN 158
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 30.3 bits (65), Expect = 2.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 394 TVYAGHKYKLSLEFPNSYPYAPPVC 468
T YA ++ + FP YP++PP C
Sbjct: 455 TPYANGLFEFDIFFPTGYPFSPPKC 479
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Frame = +3
Query: 489 FHPNVDTCGLICLDIL-------KDKWTALYDVRTVLLSIQSLL 599
F+PN+ G ICL IL ++KW + VL+SIQ ++
Sbjct: 491 FNPNLYNDGKICLSILGTWEGRPEEKWNPYCSLMQVLVSIQEVI 534
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,688,333
Number of Sequences: 27780
Number of extensions: 267608
Number of successful extensions: 689
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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