Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_C17
(933 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)... 87 1e-17
At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)... 87 2e-17
At1g78870.2 68414.m09194 ubiquitin-conjugating enzyme, putative ... 71 1e-12
At1g16890.2 68414.m02044 ubiquitin-conjugating enzyme, putative ... 71 1e-12
At1g16890.1 68414.m02043 ubiquitin-conjugating enzyme, putative ... 71 1e-12
At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E... 68 1e-11
At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E... 68 1e-11
At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E... 68 1e-11
At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E... 67 2e-11
At3g08700.1 68416.m01011 ubiquitin-conjugating enzyme, putative ... 66 4e-11
At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E... 64 2e-10
At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E... 64 2e-10
At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E... 64 2e-10
At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative ... 64 2e-10
At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)... 63 2e-10
At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)... 63 2e-10
At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa ... 63 2e-10
At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa ... 63 2e-10
At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)... 63 3e-10
At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative ... 62 4e-10
At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative ... 62 5e-10
At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative ... 62 5e-10
At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family pro... 62 7e-10
At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative ... 57 1e-08
At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative ... 56 3e-08
At2g18600.1 68415.m02166 RUB1-conjugating enzyme, putative stron... 54 2e-07
At1g78870.1 68414.m09193 ubiquitin-conjugating enzyme, putative ... 53 3e-07
At2g32790.1 68415.m04014 ubiquitin-conjugating enzyme, putative ... 51 1e-06
At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative ... 51 1e-06
At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10) id... 48 9e-06
At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E... 46 4e-05
At5g05080.1 68418.m00539 ubiquitin-conjugating enzyme, putative ... 45 6e-05
At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E... 45 8e-05
At5g42990.1 68418.m05243 ubiquitin-conjugating enzyme 18 (UBC18)... 44 1e-04
At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)... 44 2e-04
At3g57870.1 68416.m06451 ubiquitin-conjugating enzyme, putative ... 43 3e-04
At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)... 42 4e-04
At1g45050.1 68414.m05165 ubiquitin-conjugating enzyme 15 (UBC15)... 42 6e-04
At1g75440.1 68414.m08763 ubiquitin-conjugating enzyme 16 (UBC16)... 41 0.001
At4g36410.1 68417.m05173 ubiquitin-conjugating enzyme 17 (UBC17)... 40 0.003
At1g63800.1 68414.m07220 ubiquitin-conjugating enzyme 5 (UBC5) E... 29 5.8
At5g50430.1 68418.m06245 ubiquitin-conjugating enzyme, putative ... 28 7.7
At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative ... 28 7.7
At1g17230.1 68414.m02099 leucine-rich repeat family protein / pr... 28 7.7
>At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)
nearly identical to ubiquitin-conjugating enzyme UBC19
[Arabidopsis thaliana] GI:22530865; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 181
Score = 87.4 bits (207), Expect = 1e-17
Identities = 45/97 (46%), Positives = 56/97 (57%)
Frame = +3
Query: 348 ENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLICL 527
+N+F W GTI G S P ++ + FHPNVD G ICL
Sbjct: 63 DNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVK-FETCCFHPNVDLYGNICL 121
Query: 528 DILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLNSSS 638
DIL+DKW++ YDVRT+LLSIQSLL EPN SPLN+ +
Sbjct: 122 DILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQA 158
Score = 46.0 bits (104), Expect = 4e-05
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = +2
Query: 224 AKQSEDTIKLKDNHAVSKRLQKELMELMRCSDKGISAFP 340
+KQS K D+H+V KRLQ ELM LM +D GISAFP
Sbjct: 22 SKQSAPPTKTVDSHSVLKRLQSELMGLMMGADPGISAFP 60
>At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)
nearly identical to ubiquitin-conjugating enzyme UBC20
[Arabidopsis thaliana] GI:22530867; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 180
Score = 87.0 bits (206), Expect = 2e-17
Identities = 45/97 (46%), Positives = 55/97 (56%)
Frame = +3
Query: 348 ENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLICL 527
+N+F W GTI G S P + + FHPNVD G ICL
Sbjct: 62 DNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVK-FETCCFHPNVDVYGNICL 120
Query: 528 DILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLNSSS 638
DIL+DKW++ YDVRT+LLSIQSLL EPN SPLN+ +
Sbjct: 121 DILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQA 157
Score = 41.5 bits (93), Expect = 8e-04
Identities = 24/52 (46%), Positives = 28/52 (53%)
Frame = +2
Query: 185 QNINPHYASSSNPAKQSEDTIKLKDNHAVSKRLQKELMELMRCSDKGISAFP 340
Q P +SN +KQ K D+ +V KRLQ ELM LM GISAFP
Sbjct: 8 QGNTPADPPASNGSKQPAAPTKTVDSQSVLKRLQSELMGLMMGGGPGISAFP 59
>At1g78870.2 68414.m09194 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 153
Score = 70.9 bits (166), Expect = 1e-12
Identities = 29/50 (58%), Positives = 38/50 (76%)
Frame = +3
Query: 486 VFHPNVDTCGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLNSS 635
++HPN+D G ICLDILKDKW+ +RTVLLSIQ+LL+ PN PL+ +
Sbjct: 77 IYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSEN 126
>At1g16890.2 68414.m02044 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 153
Score = 70.9 bits (166), Expect = 1e-12
Identities = 29/50 (58%), Positives = 38/50 (76%)
Frame = +3
Query: 486 VFHPNVDTCGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLNSS 635
++HPN+D G ICLDILKDKW+ +RTVLLSIQ+LL+ PN PL+ +
Sbjct: 77 IYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSEN 126
>At1g16890.1 68414.m02043 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 120
Score = 70.9 bits (166), Expect = 1e-12
Identities = 29/50 (58%), Positives = 38/50 (76%)
Frame = +3
Query: 486 VFHPNVDTCGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLNSS 635
++HPN+D G ICLDILKDKW+ +RTVLLSIQ+LL+ PN PL+ +
Sbjct: 44 IYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSEN 93
>At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E2;
identical to gi:2689242, SP:P42745
Length = 152
Score = 67.7 bits (158), Expect = 1e-11
Identities = 28/51 (54%), Positives = 38/51 (74%)
Frame = +3
Query: 486 VFHPNVDTCGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLNSSS 638
+FHPN+ G ICLDIL+++W+ +YDV +L SIQSLL +PN SP NS +
Sbjct: 76 MFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 394 TVYAGHKYKLSLEFPNSYPYAPPVCQIYDSLF 489
T + G +KLSL+F YP PP + +F
Sbjct: 46 TPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMF 77
>At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 67.7 bits (158), Expect = 1e-11
Identities = 28/51 (54%), Positives = 38/51 (74%)
Frame = +3
Query: 486 VFHPNVDTCGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLNSSS 638
+FHPN+ G ICLDIL+++W+ +YDV +L SIQSLL +PN SP NS +
Sbjct: 76 MFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 394 TVYAGHKYKLSLEFPNSYPYAPPVCQIYDSLF 489
T + G +KLSL+F YP PP + +F
Sbjct: 46 TPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMF 77
>At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 67.7 bits (158), Expect = 1e-11
Identities = 28/51 (54%), Positives = 38/51 (74%)
Frame = +3
Query: 486 VFHPNVDTCGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLNSSS 638
+FHPN+ G ICLDIL+++W+ +YDV +L SIQSLL +PN SP NS +
Sbjct: 76 MFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 394 TVYAGHKYKLSLEFPNSYPYAPPVCQIYDSLF 489
T + G +KLSL+F YP PP + +F
Sbjct: 46 TPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMF 77
>At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E2;
identical to gi:431261, SP:P42746
Length = 150
Score = 66.9 bits (156), Expect = 2e-11
Identities = 28/51 (54%), Positives = 38/51 (74%)
Frame = +3
Query: 486 VFHPNVDTCGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLNSSS 638
+FHPN+ G ICLDIL+++W+ +YDV VL SIQSLL +PN SP N+ +
Sbjct: 76 MFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEA 126
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 394 TVYAGHKYKLSLEFPNSYPYAPPVCQIYDSLF 489
T + G +KL+L F YP PP+ + +F
Sbjct: 46 TPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMF 77
>At3g08700.1 68416.m01011 ubiquitin-conjugating enzyme, putative
strong similar to ubiquitin-conjugating enzymes E2-17
from [Arabidopsis thaliana] SP|P35134, SP|P35132,
SP|P35133; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 149
Score = 65.7 bits (153), Expect = 4e-11
Identities = 36/93 (38%), Positives = 48/93 (51%)
Frame = +3
Query: 348 ENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLICL 527
E++F W TI GP + S P + + N V+HPN+D+ G ICL
Sbjct: 29 EDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKV-NFKTKVYHPNIDSKGSICL 87
Query: 528 DILKDKWTALYDVRTVLLSIQSLLAEPNTQSPL 626
DILK++W+ VLLSI SLL +PN PL
Sbjct: 88 DILKEQWSPAPTTSKVLLSICSLLTDPNPNDPL 120
>At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 149
Score = 63.7 bits (148), Expect = 2e-10
Identities = 34/94 (36%), Positives = 49/94 (52%)
Frame = +3
Query: 345 SENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLIC 524
+E++F W TI GP + P + ++ VFHPN+++ G IC
Sbjct: 28 AEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVA-FRTKVFHPNINSNGSIC 86
Query: 525 LDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPL 626
LDILK++W+ + VLLSI SLL +PN PL
Sbjct: 87 LDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 120
>At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 63.7 bits (148), Expect = 2e-10
Identities = 34/94 (36%), Positives = 49/94 (52%)
Frame = +3
Query: 345 SENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLIC 524
+E++F W TI GP + P + ++ VFHPN+++ G IC
Sbjct: 27 AEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVA-FRTKVFHPNINSNGSIC 85
Query: 525 LDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPL 626
LDILK++W+ + VLLSI SLL +PN PL
Sbjct: 86 LDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 119
>At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 63.7 bits (148), Expect = 2e-10
Identities = 34/94 (36%), Positives = 49/94 (52%)
Frame = +3
Query: 345 SENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLIC 524
+E++F W TI GP + P + ++ VFHPN+++ G IC
Sbjct: 27 AEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVA-FRTKVFHPNINSNGSIC 85
Query: 525 LDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPL 626
LDILK++W+ + VLLSI SLL +PN PL
Sbjct: 86 LDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 119
>At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative
identical or nearly so to Ubiquitin-conjugating enzymes
SP|P35132, SP|P35131, SP|P35133 from {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 63.7 bits (148), Expect = 2e-10
Identities = 35/94 (37%), Positives = 49/94 (52%)
Frame = +3
Query: 345 SENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLIC 524
+E++F W TI GP + P + ++ VFHPNV++ G IC
Sbjct: 27 AEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVA-FRTKVFHPNVNSNGSIC 85
Query: 525 LDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPL 626
LDILK++W+ + VLLSI SLL +PN PL
Sbjct: 86 LDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 119
>At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/94 (36%), Positives = 49/94 (52%)
Frame = +3
Query: 345 SENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLIC 524
+E++F W TI GP + P + ++ VFHPN+++ G IC
Sbjct: 27 AEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVA-FRTKVFHPNINSNGSIC 85
Query: 525 LDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPL 626
LDILK++W+ + VLLSI SLL +PN PL
Sbjct: 86 LDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 119
>At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/94 (36%), Positives = 49/94 (52%)
Frame = +3
Query: 345 SENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLIC 524
+E++F W TI GP + P + ++ VFHPN+++ G IC
Sbjct: 27 AEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVA-FRTKVFHPNINSNGSIC 85
Query: 525 LDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPL 626
LDILK++W+ + VLLSI SLL +PN PL
Sbjct: 86 LDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 119
>At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 178
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/94 (36%), Positives = 49/94 (52%)
Frame = +3
Query: 345 SENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLIC 524
+E++F W TI GP + P + ++ VFHPN+++ G IC
Sbjct: 57 AEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVA-FRTKVFHPNINSNGSIC 115
Query: 525 LDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPL 626
LDILK++W+ + VLLSI SLL +PN PL
Sbjct: 116 LDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 149
>At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 148
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/94 (36%), Positives = 49/94 (52%)
Frame = +3
Query: 345 SENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLIC 524
+E++F W TI GP + P + ++ VFHPN+++ G IC
Sbjct: 27 AEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVA-FRTKVFHPNINSNGSIC 85
Query: 525 LDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPL 626
LDILK++W+ + VLLSI SLL +PN PL
Sbjct: 86 LDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 119
>At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)
E2; identical to gi:12643427, SP:P35134
Length = 148
Score = 62.9 bits (146), Expect = 3e-10
Identities = 34/94 (36%), Positives = 49/94 (52%)
Frame = +3
Query: 345 SENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLIC 524
+E++F W TI GP + P + +S V+HPN+++ G IC
Sbjct: 27 AEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVS-FKTKVYHPNINSNGSIC 85
Query: 525 LDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPL 626
LDILK++W+ + VLLSI SLL +PN PL
Sbjct: 86 LDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 119
>At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative
strong similarity to SP|P35133 Ubiquitin-conjugating
enzyme E2-17 kDa 10 (EC 6.3.2.19) (Ubiquitin- protein
ligase 10) (Ubiquitin carrier protein 10) {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 62.5 bits (145), Expect = 4e-10
Identities = 35/93 (37%), Positives = 47/93 (50%)
Frame = +3
Query: 348 ENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLICL 527
E++F W TI GP + P + + VFHPN+++ G ICL
Sbjct: 28 EDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVV-FRTKVFHPNINSNGNICL 86
Query: 528 DILKDKWTALYDVRTVLLSIQSLLAEPNTQSPL 626
DILKD+W+ + VLLSI SLL +PN PL
Sbjct: 87 DILKDQWSPALTISKVLLSICSLLTDPNPDDPL 119
>At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 62.1 bits (144), Expect = 5e-10
Identities = 33/93 (35%), Positives = 49/93 (52%)
Frame = +3
Query: 348 ENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLICL 527
+++F+W TI GP + P + ++ V+HPN+++ G ICL
Sbjct: 28 DDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVA-FRTKVYHPNINSNGSICL 86
Query: 528 DILKDKWTALYDVRTVLLSIQSLLAEPNTQSPL 626
DILK++W+ V VLLSI SLL +PN PL
Sbjct: 87 DILKEQWSPALTVSKVLLSICSLLTDPNPDDPL 119
>At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 62.1 bits (144), Expect = 5e-10
Identities = 33/93 (35%), Positives = 49/93 (52%)
Frame = +3
Query: 348 ENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLICL 527
+++F+W TI GP + P + ++ V+HPN+++ G ICL
Sbjct: 28 DDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVA-FRTKVYHPNINSNGSICL 86
Query: 528 DILKDKWTALYDVRTVLLSIQSLLAEPNTQSPL 626
DILK++W+ V VLLSI SLL +PN PL
Sbjct: 87 DILKEQWSPALTVSKVLLSICSLLTDPNPDDPL 119
>At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family
protein similar to Ubiquitin-conjugating enzyme E2-16
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) from {Schizosaccharomyces pombe}
SP|P46595, {Caenorhabditis elegans} SP|P35129; contains
Pfam profile PF00179: Ubiquitin-conjugating enzyme
Length = 154
Score = 61.7 bits (143), Expect = 7e-10
Identities = 33/94 (35%), Positives = 45/94 (47%)
Frame = +3
Query: 345 SENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLIC 524
S N+++W I GP P + + P++HPN++ G IC
Sbjct: 33 SNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFT-FKTPIYHPNINDEGSIC 91
Query: 525 LDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPL 626
++ILKDKWT V VLLSI LL +PN PL
Sbjct: 92 MNILKDKWTPALMVEKVLLSILLLLEKPNPDDPL 125
>At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative
similar to SP|O60015 Ubiquitin-conjugating enzyme E2-21
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) {Pichia angusta}; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 157
Score = 57.2 bits (132), Expect = 1e-08
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Frame = +3
Query: 351 NLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVD-TCGLICL 527
N+FKW I GP + P++ + L +FHPNV G ICL
Sbjct: 33 NIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFL-TKIFHPNVHFKTGEICL 91
Query: 528 DILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLNSSS 638
DILK+ W+ + +++V +I +L+A P SPLN S
Sbjct: 92 DILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDS 128
>At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin conjugating enzyme
[Lycopersicon esculentum] GI:886679; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 192
Score = 56.0 bits (129), Expect = 3e-08
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +3
Query: 345 SENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDT-CGLI 521
S+NL + GTI GP+ P + V+HPN+ + G I
Sbjct: 29 SDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQ-FSTKVWHPNISSQSGAI 87
Query: 522 CLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSP 623
CLDILKD+W+ ++T L+SIQ+LL+ P + P
Sbjct: 88 CLDILKDQWSPALTLKTALVSIQALLSAPEPKDP 121
>At2g18600.1 68415.m02166 RUB1-conjugating enzyme, putative strong
similarity to gi:6635457 RUB1 conjugating enzyme
[Arabidopsis thaliana]; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 185
Score = 53.6 bits (123), Expect = 2e-07
Identities = 20/48 (41%), Positives = 32/48 (66%)
Frame = +3
Query: 486 VFHPNVDTCGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLN 629
V+HPN+D G +CL+IL++ W + ++ TV+ + L EPN + PLN
Sbjct: 102 VYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLN 149
>At1g78870.1 68414.m09193 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 112
Score = 52.8 bits (121), Expect = 3e-07
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +3
Query: 486 VFHPNVDTCGLICLDILKDKWTALYDVRTVLLSIQS 593
++HPN+D G ICLDILKDKW+ +RTVLL S
Sbjct: 77 IYHPNIDKLGRICLDILKDKWSPALQIRTVLLRYMS 112
>At2g32790.1 68415.m04014 ubiquitin-conjugating enzyme, putative
similar to ubiquitin conjugating enzyme from [Oryza
sativa] GI:1373001, {Arabidopsis thaliana} SP|P35134,
SP|P35131; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 177
Score = 51.2 bits (117), Expect = 1e-06
Identities = 27/87 (31%), Positives = 42/87 (48%)
Frame = +3
Query: 348 ENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLICL 527
EN+F+W T+NGP+ P ++ +FHPN+ G I +
Sbjct: 57 ENIFRWEATVNGPVGCPYEKGVFTVSVHIPPKYPYEPPKIT-FKTKIFHPNISEIGEIFV 115
Query: 528 DILKDKWTALYDVRTVLLSIQSLLAEP 608
DIL +W++ + VLLSI S+L+ P
Sbjct: 116 DILGSRWSSALTINLVLLSICSILSNP 142
>At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative
similar to Ubiquitin-conjugating enzyme E2
(Ubiquitin-protein ligase) (Ubiquitin carrier protein)
from {Xenopus laevis} SP|P51669, {Schizosaccharomyces
pombe} SP|P46595, {Caenorhabditis elegans} SP|P35129;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 409
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Frame = +3
Query: 483 PVFHPNVDTCGLICLDIL----KDKWTALYDVRTVLLSIQSLLAEPNTQSPL 626
P++HPN+D G ICLDIL K W ++ TVL S++ LL+EPN L
Sbjct: 86 PIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGL 137
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 394 TVYAGHKYKLSLEFPNSYPYAPPV 465
TVYA + L ++ P YP+ PP+
Sbjct: 57 TVYANGIFNLKIQIPERYPFQPPI 80
>At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10)
identical to ubiquitin-conjugating enzyme COP10
[Arabidopsis thaliana] GI:20065779; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 182
Score = 48.0 bits (109), Expect = 9e-06
Identities = 27/92 (29%), Positives = 42/92 (45%)
Frame = +3
Query: 348 ENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLICL 527
+NL+ WI TI GP P + L ++H NVDT G + +
Sbjct: 63 DNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLV-FKTRIYHCNVDTAGDLSV 121
Query: 528 DILKDKWTALYDVRTVLLSIQSLLAEPNTQSP 623
+IL+D W+ + VL +I+S+ +P SP
Sbjct: 122 NILRDSWSPALTITKVLQAIRSIFLKPEPYSP 153
>At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 145
Score = 46.0 bits (104), Expect = 4e-05
Identities = 25/82 (30%), Positives = 39/82 (47%)
Frame = +3
Query: 345 SENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLIC 524
+E++F W TI GP + P + ++ VFHPN+++ G IC
Sbjct: 27 AEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVA-FRTKVFHPNINSNGSIC 85
Query: 525 LDILKDKWTALYDVRTVLLSIQ 590
LDILK++W+ + V L Q
Sbjct: 86 LDILKEQWSPALTISKVTLIFQ 107
>At5g05080.1 68418.m00539 ubiquitin-conjugating enzyme, putative
similar to SP|Q16763 Ubiquitin-conjugating enzyme E2-24
kDa (EC 6.3.2.19) (Ubiquitin- protein ligase) (Ubiquitin
carrier protein) {Homo sapiens}; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 251
Score = 45.2 bits (102), Expect = 6e-05
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +3
Query: 486 VFHPNVDTCGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLNSSS 638
+FHPNV + G IC++ LK W +R VL ++ LL EP +S LN +
Sbjct: 82 IFHPNVASNGEICVNTLKKDWNPSLGLRHVLSVVRCLLIEPFPESALNEQA 132
>At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E2;
identical to gi:992703, SP:P42747
Length = 198
Score = 44.8 bits (101), Expect = 8e-05
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Frame = +3
Query: 276 NDSRKS*WS*CGAVIKEYQH-SLXSENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPI 452
N+S+ S W+ + YQ+ S N+F+W TI GP + P
Sbjct: 44 NNSKASPWN-----LSPYQNQSCDCYNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPN 98
Query: 453 RTTCLSNL*LPVFHPNVDTCGLICLDIL-------------KDKWTALYDVRTVLLSIQS 593
+ ++HPNV + G +C+ IL ++WT ++ V +++LSI S
Sbjct: 99 SPPTV-RFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIIS 157
Query: 594 LLAEPNTQSPLN 629
+L+ PN +SP N
Sbjct: 158 MLSGPNDESPAN 169
>At5g42990.1 68418.m05243 ubiquitin-conjugating enzyme 18 (UBC18)
E2; identical to gi:2801448
Length = 161
Score = 44.4 bits (100), Expect = 1e-04
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Frame = +3
Query: 327 YQHSLXSENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVD 506
++H + ++NL KW+ + G + P+ + + HP++
Sbjct: 35 FKHRV-TDNLQKWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIY 93
Query: 507 TCGLICLDILKDKWTALYDVRTVLLSIQSLL-AEPNTQSPLNSSSF 641
+ G ICLDIL D W+ V +V +SI S+L + P Q P ++ +
Sbjct: 94 SNGHICLDILYDSWSPAMTVSSVCISILSMLSSSPEKQRPTDNDRY 139
>At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)
E2; UbcAT3; identical to gi:2129757, S46656
Length = 167
Score = 43.6 bits (98), Expect = 2e-04
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Frame = +3
Query: 306 CGAVIKEYQHSLXSE-NLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*L 482
C + + L E N+F+W +I GP + P+ ++
Sbjct: 18 CKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFT-S 76
Query: 483 PVFHPNVDTCGLICLDIL-------------KDKWTALYDVRTVLLSIQSLLAEPNTQSP 623
++HPNV + G +C+ IL ++WT ++ V +++LSI S+L+ PN +SP
Sbjct: 77 EMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPNDESP 136
Query: 624 LN 629
N
Sbjct: 137 AN 138
>At3g57870.1 68416.m06451 ubiquitin-conjugating enzyme, putative
strong similarity to SP|P50550 Ubiquitin-like protein
SUMO-1 conjugating enzyme (EC 6.3.2.19) (SUMO- 1-protein
ligase) (Ubiquitin carrier protein)
(Ubiquitin-conjugating enzyme UbcE2A) {Xenopus laevis};
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 160
Score = 43.2 bits (97), Expect = 3e-04
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 489 FHPNVDTCGLICLDILKDK--WTALYDVRTVLLSIQSLLAEPNTQSPLNSSSF 641
FHPNV G +CL IL + W V+ +L+ IQ LL PN P + +
Sbjct: 83 FHPNVYPSGTVCLSILNEDYGWRPAITVKQILVGIQDLLDTPNPADPAQTDGY 135
>At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)
E2; identical to gi:992706
Length = 166
Score = 42.3 bits (95), Expect = 4e-04
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Frame = +3
Query: 348 ENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVDTCGLICL 527
+N+F+W TI GP + P + ++HPNV G +C+
Sbjct: 32 KNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTV-RFTSDIWHPNVYPDGRVCI 90
Query: 528 DIL-------------KDKWTALYDVRTVLLSIQSLLAEPNTQSPLN 629
IL ++WT ++ V +++LSI S+L+ PN +SP N
Sbjct: 91 SILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPAN 137
>At1g45050.1 68414.m05165 ubiquitin-conjugating enzyme 15 (UBC15)
E2; identical to ubiquitin-conjugating enzyme 15
GI:2801442 from [Arabidopsis thaliana]
Length = 161
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +3
Query: 492 HPNVDTCGLICLDILKDKWTALYDVRTVLLSIQSLL-AEPNTQSPLNSSSF 641
HP++ + G ICLDIL D W+ V +V +SI S+L + P Q P ++ +
Sbjct: 89 HPHIYSNGHICLDILYDSWSPAMTVNSVCISILSMLSSSPAKQRPADNDRY 139
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 394 TVYAGHKYKLSLEFPNSYPYAPP 462
T+YA Y+L +EFP YP P
Sbjct: 56 TLYANETYQLQVEFPEHYPMEAP 78
>At1g75440.1 68414.m08763 ubiquitin-conjugating enzyme 16 (UBC16)
E2; identical to gi:2801444, GB:AAC39325 from
[Arabidopsis thaliana] (Plant Mol. Biol. 23 (2), 387-396
(1993))
Length = 161
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Frame = +3
Query: 327 YQHSLXSENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVD 506
++H + ++NL +WI + G + P+ + + L HP++
Sbjct: 35 FKHKV-TDNLQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIY 93
Query: 507 TCGLICLDILKDKWTALYDVRTVLLSIQSLL-AEPNTQSPLNSSSF 641
+ G ICLDIL D W+ V ++ +SI S+L + Q P ++ +
Sbjct: 94 SNGHICLDILYDSWSPAMTVSSICISILSMLSSSTEKQRPTDNDRY 139
>At4g36410.1 68417.m05173 ubiquitin-conjugating enzyme 17 (UBC17)
E2; identical to gi:2801446
Length = 161
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Frame = +3
Query: 327 YQHSLXSENLFKWIGTINGPLXNCXXXXXXXXXXXXSKFIPIRTTCLSNL*LPVFHPNVD 506
++H + S+NL +WI ++G + P+ + HP++
Sbjct: 35 FKHRV-SDNLQRWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIY 93
Query: 507 TCGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNT-QSPLNSSSF 641
+ G ICLD+L D W+ + ++ LSI S+L+ + Q P ++ +
Sbjct: 94 SNGHICLDVLYDSWSPAMRLSSICLSILSMLSSSSVKQKPKDNDHY 139
>At1g63800.1 68414.m07220 ubiquitin-conjugating enzyme 5 (UBC5) E2;
identical to gi:431269, SP:P42749
Length = 185
Score = 28.7 bits (61), Expect = 5.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 394 TVYAGHKYKLSLEFPNSYPYAPP 462
++Y G +K+ +E P++YPY P
Sbjct: 42 SIYEGGVWKIRVELPDAYPYKSP 64
>At5g50430.1 68418.m06245 ubiquitin-conjugating enzyme, putative
similar to ubiquitin conjugating enzyme 6 from [Homo
sapiens] GI:14029267, [Mus musculus] GI:14029263;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 243
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 394 TVYAGHKYKLSLEFPNSYPYAPP 462
T +AG Y ++FP YPY PP
Sbjct: 47 TPFAGGFYYGKIKFPPEYPYKPP 69
>At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative
similar to ubiquitin conjugating enzyme 6 from [Homo
sapiens] GI:14029267, [Mus musculus] GI:14029263;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 237
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 394 TVYAGHKYKLSLEFPNSYPYAPP 462
T +AG Y ++FP YPY PP
Sbjct: 47 TPFAGGFYYGKIKFPPEYPYKPP 69
>At1g17230.1 68414.m02099 leucine-rich repeat family protein / protein
kinase family protein contains protein kinase domain,
Pfam:PF00069; contains leucine-rich repeats, Pfam:PF00560
Length = 1133
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 404 QATNTNYHLNFQIHTHTHHLFVKFMTPCFS 493
+ N++ + IHTHTH L F T C S
Sbjct: 1093 EEANSSKGMYLHIHTHTHTLLCNFRTFCDS 1122
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,853,292
Number of Sequences: 28952
Number of extensions: 246529
Number of successful extensions: 748
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2227127592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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