Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_C15
         (926 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37830.1 68417.m05352 cytochrome c oxidase-related contains w...    38   0.012
At4g16745.1 68417.m02529 exostosin family protein contains Pfam ...    33   0.27 

>At4g37830.1 68417.m05352 cytochrome c oxidase-related contains weak
           similarity to cytochrome c oxidase polypeptide
           VIa-liver, mitochondrial precursor (EC 1.9.3.1)
           (Swiss-Prot:P10818) [Rattus norvegicus]
          Length = 102

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +3

Query: 165 WKRMSFFVAFPAIALGMLNAYLAHQEEHH-ERPPFVPYEYMRIRTKRFPWG-DGQKSLFH 338
           W+++++       AL +   Y+  +  HH E PP   Y +M IR K FPWG DG   + H
Sbjct: 44  WEKITYLGIASCTALAV---YVLSKGHHHGEDPP--AYPHMHIRNKEFPWGPDGLFEVKH 98

Query: 339 N 341
           N
Sbjct: 99  N 99


>At4g16745.1 68417.m02529 exostosin family protein contains Pfam
           PF03016: Exostosin family
          Length = 542

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 273 YEYMRIRTKRFPWGDGQKSLFHNPHVNAL 359
           YE M +  K + + DG K +FH PH+N +
Sbjct: 193 YELMELILKVYIYPDGDKPIFHEPHLNGI 221


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,318,498
Number of Sequences: 28952
Number of extensions: 216699
Number of successful extensions: 437
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2207676696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)