Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_C12
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 152 7e-38
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 29 0.68
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 2.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 4.8
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 4.8
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 4.8
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 27 4.8
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.3
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 26 8.4
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 152 bits (368), Expect = 7e-38
Identities = 82/173 (47%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Frame = +1
Query: 166 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQG-DIQIEGFNPSAEEADEGTD 342
M +YKD+I+GDE+ SD Y +K VD+++YE ++VT QG D+ I G NPSAE+A+E +
Sbjct: 1 MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59
Query: 343 SAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKV 522
E+ ++V + RL T +F DKKSY Y+K YMK + A+L+E P++V VF+ N
Sbjct: 60 EGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGF 117
Query: 523 MKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTXIPIMMFFXHGLEEEKF 681
+K IL FK+ F+ GESMD D MV +M YR+ DG P M+FF GL EKF
Sbjct: 118 VKKILANFKDYDFYIGESMDPDAMVVLMNYRE-DG-ITPYMIFFKDGLVSEKF 168
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 29.5 bits (63), Expect = 0.68
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 361 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 507
+D V ++L+E F ++K T+YLK + L K + PD VE T
Sbjct: 89 IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 42 FLDSLVSFAFFHMSNVLSGLVVEARSRSFGF 134
F+D + +F FF MSN+ GLV+ R G+
Sbjct: 364 FVDPVSAFRFFEMSNI-HGLVIRNRRLKIGW 393
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 4.8
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 33 SLRFLDSLVSFAFFHMSNVLSGLVVEARSRSF 128
S+ F+D+L SF F +SN L+ L E R R F
Sbjct: 1461 SMVFIDALGSFTTFSLSNNLASLHAE-RQRCF 1491
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -1
Query: 203 ISSPVIMSL*IFILMDWRRLKII 135
ISSP I + IFILM+ RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 225 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGF 115
+F + + L T + LI + +E+IK KNR +GF
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 268 VTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGD 411
+T G Q + F PS E +E TD+ ++ V ++ V F D
Sbjct: 6 LTEVWGKPQKDIFFPSGSEVEESTDAPIQRTVQPIVTGSSVLALKFAD 53
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 637 VXAYHQSLYIPSWQPC-HHN 581
V A+ Q L++P W PC HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 381 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDIT 283
V++D +NS LDG + + S R +T LD++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLS 373
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,407
Number of Sequences: 5004
Number of extensions: 60582
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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