Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_C12
         (896 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21409| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_39561| Best HMM Match : ELMO_CED12 (HMM E-Value=2.52234e-44)        29   3.9  

>SB_21409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
 Frame = +1

Query: 265 LVTRAQG-DIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKD 441
           +V+  QG D  + G N SAE+A +  +    +G ++V+ +RLVE   +   K      K 
Sbjct: 39  IVSEKQGIDENLIGGNKSAEDACDDVEDGCTTGCNVVMANRLVE-IPYKTFKELLAEFKP 97

Query: 442 YMKKLVAKL-EEKAPD-QVEVFKTNMNKVMKDILGRFKELQFFTGESMDCD 588
           Y+KK+   + EE  PD +V+ F+      +  I   FKE QFF     DCD
Sbjct: 98  YIKKVKEHMKEEGCPDEEVKGFEKAAMDYILSIKKNFKEYQFF---QPDCD 145


>SB_39561| Best HMM Match : ELMO_CED12 (HMM E-Value=2.52234e-44)
          Length = 520

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = -3

Query: 222 FVSVREHLITSDN---VLIDLHFDGLEAIKNNKNRKNGFSPQQLNRKGHLTCERKQMKQD 52
           F S+ +   T D+      D+ FD +  I +N +R      Q+ + + H   +R+Q+  +
Sbjct: 74  FKSIAQRSCTEDHDGDAEFDIDFDAVVNINDNNDRTGD---QKASERNHAAHDRRQLSGE 130

Query: 51  CPKILRNS 28
            P+ +RN+
Sbjct: 131 RPENMRNA 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,138,543
Number of Sequences: 59808
Number of extensions: 415111
Number of successful extensions: 949
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)