Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_C09
(909 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce... 51 2e-07
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 35 0.014
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 31 0.17
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 30 0.52
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 29 0.91
SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomy... 29 1.2
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 3.7
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 27 4.9
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 26 6.4
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 26 6.4
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.4
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 26 8.5
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 26 8.5
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 26 8.5
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 26 8.5
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce... 26 8.5
>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 51.2 bits (117), Expect = 2e-07
Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 4/146 (2%)
Frame = +1
Query: 355 ADSISKILGS--SKPKNKKTLVLSRAKKHSEIVKKEKEEKPSFEVIGEVNEIESKVKKEE 528
AD I+ IL ++ + T VLS +KK + ++K EK ++ + +++KE
Sbjct: 68 ADDIADILNQQVTQTDEQDTPVLSLSKKSKKALRKSNAEKKDSKL--RTSRRRERLRKEM 125
Query: 529 INVEPPAKKVKHEKPSIRIKPNVLEKDRXRLLNKIATKGVVQLFNAVRNQQKSIEKEMDR 708
+ V E R L +IA +GVVQLFNAVR Q ++ ++R
Sbjct: 126 VGRVTSVVAVNAETAKALFT-------HERELRRIARRGVVQLFNAVRTAQ--LQSSLNR 176
Query: 709 NDLSEGK--KEKILKKFDKRTFLDTL 780
++S G+ +E+ +K+ K +FLD +
Sbjct: 177 ENISGGRTAREQKVKELSKASFLDLI 202
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 35.1 bits (77), Expect = 0.014
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 367 SKILGSSKPKN-KKTLVLSRAKKHSEIVKKEKEEKPSFEVIGEVNEIESKVKKEEINVE 540
+K++G+ KN KKT V+ + +EI K + K + G N +S VKKEE + +
Sbjct: 81 AKVMGNGGLKNGKKTAVVKEEEDFNEIAKPSPKHKRVSKANGSKNGAKSAVKKEESDTD 139
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 31.5 bits (68), Expect = 0.17
Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Frame = +1
Query: 427 KKHSEIVKKEKEEKPSFEVIGEVNE------IESKVKKEEINVEPPAKKVKHEKPSIRIK 588
K+ SE+ +KE+ +K +FE G V++ I+S + E E P K+++ + R +
Sbjct: 219 KRISELEEKERIQKKAFEDKGLVSDQDVNHSIDSDDQSEHEQAETPIPSSKNKRKT-RSQ 277
Query: 589 PNVLEKDRXRLLNKIATKGVVQLFNAVRNQQKSIEKEMDRNDLSE 723
N + + R L + K +L + ++ +I K++ + D +E
Sbjct: 278 RNKIRQRREEELRLLEQKKNEELLRTI-DKAPAISKKLQQKDKAE 321
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 29.9 bits (64), Expect = 0.52
Identities = 18/75 (24%), Positives = 43/75 (57%)
Frame = +1
Query: 481 VIGEVNEIESKVKKEEINVEPPAKKVKHEKPSIRIKPNVLEKDRXRLLNKIATKGVVQLF 660
++ ++ +++ + KK++ + KK+ H + S++ K N LE L+++ K + L
Sbjct: 796 LVQQIRKLKDENKKDQSGTDKLMKKIYHCEQSLKEKTNSLE----TLVSE--KKELKNLL 849
Query: 661 NAVRNQQKSIEKEMD 705
+A R +K+I+ E++
Sbjct: 850 DAERRSKKAIQLELE 864
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 29.1 bits (62), Expect = 0.91
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 505 ESKVKKEEINVEPPAKKVKHEKPSIRIK 588
E ++K EE VEPP+KK+ + +PS I+
Sbjct: 1658 EKRMKNEEF-VEPPSKKLANSEPSKEIR 1684
>SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 223
Score = 28.7 bits (61), Expect = 1.2
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Frame = +1
Query: 403 KTLVLSRAKKHSEI---VKKEKEEKPSFEVIGE-----VNEIESKVKKEEINVEPPAKKV 558
+TL+ + K S + + KEEKP+ E + E V E++SK+ + + E K+V
Sbjct: 15 RTLIRAPINKRSFLWYSTEAAKEEKPAEEKVAETENVDVKELQSKLSELKSKYEAKDKEV 74
Query: 559 KHEKPSIR 582
K SIR
Sbjct: 75 AELKGSIR 82
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 3.7
Identities = 28/135 (20%), Positives = 65/135 (48%), Gaps = 2/135 (1%)
Frame = +1
Query: 364 ISKILGSSKPKNKKT-LVLSRAKKHSEIVKKEKEEKPSFEVIGEVNEIESKVKKEEINVE 540
+ KI K ++KK L L++ ++ + E+ + + + + E++ K+EE ++
Sbjct: 588 LKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLK 647
Query: 541 PPAKKVKHEKPSIRIKPNVLEKDRXRLLNKIATKGVVQLFNAVRNQQKSIEKEMDRNDLS 720
+K + E + + +K+R + L K + + R Q+ + +E ++ L
Sbjct: 648 REQEKKQQELERQKREEKQKQKEREKKLKKQQQEADRE--KMAREQR--LREEEEKRILE 703
Query: 721 EGK-KEKILKKFDKR 762
E K +EK+ K+ ++R
Sbjct: 704 ERKRREKLDKEEEER 718
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +1
Query: 664 AVRNQQKSIEKEMDRNDLSEGKKEKILKKFD---KRTFLDTL 780
A +N + ++K+ +L ++EK KK D KR FLDTL
Sbjct: 98 ASKNIELKLQKKEKEEELRNLEEEKAKKKKDANLKRKFLDTL 139
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 590 GLILIDGFSCFTFLAGGSTLISSFLTFD 507
GL IDGF + + GG L+ +F + D
Sbjct: 278 GLTSIDGFPVISEIGGGLVLLGNFSSID 305
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +1
Query: 370 KILGSSKPKNKKTLVLSRAKKHSEIVKKEKEEKPSFEVIGEVNEIESKVKKEEINVE 540
K L + K N+K L + + + +K E+ E + + E+N + S+++ ++ N E
Sbjct: 71 KFLQNEKLNNEKLLEQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSNPE 127
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 6.4
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +1
Query: 331 RLLANEGWADSISKILGSSKPKNKKTLVLSRAKKHSE----IVKKEKEEKPSFEVIGEVN 498
R ++++ + D + + + K +K LV + K + E I+KK K+E+ + E
Sbjct: 35 RKISHQKYTDKLLEANDNETTK-RKLLVKQKRKSNKEFQSNIIKKRKDEERKGTLKTEQA 93
Query: 499 EIESKVKKEEINVEPPAKK 555
E +++ + +E AKK
Sbjct: 94 NEEELLQRSRLELERKAKK 112
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 415 LSRAKKHSEIVKKEKEE-KPSFEVIGEVNEIESKVKKEEINVEPPAKKVK 561
+S KK S KK++EE E E E +V++E EPP + ++
Sbjct: 1236 ISNTKKSSRTKKKKEEETNRGDETSPEGTVGEDEVEEEPRQAEPPKRALR 1285
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 8.5
Identities = 21/83 (25%), Positives = 41/83 (49%)
Frame = +1
Query: 358 DSISKILGSSKPKNKKTLVLSRAKKHSEIVKKEKEEKPSFEVIGEVNEIESKVKKEEINV 537
DS + S K K +KT +K+ KKEK+EK ++ + ++K ++ +
Sbjct: 117 DSSVSPVSSKKVKVRKTSGKESSKREKSKKKKEKKEKKD-----KLKKKSKRLKLDDSHT 171
Query: 538 EPPAKKVKHEKPSIRIKPNVLEK 606
+ +KV+ +K S + + L+K
Sbjct: 172 QKRKRKVR-DKESKKSSKSGLKK 193
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 629 LFNNLSLSFSKTFGLILIDGF 567
LF NLS S+SKTF L + + F
Sbjct: 232 LFKNLSPSYSKTFFLFISNQF 252
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 8.5
Identities = 20/90 (22%), Positives = 39/90 (43%)
Frame = +1
Query: 439 EIVKKEKEEKPSFEVIGEVNEIESKVKKEEINVEPPAKKVKHEKPSIRIKPNVLEKDRXR 618
++ K +E + E ++E E + +E + + +++ K + EK+
Sbjct: 126 QVTFKAEERRKREEKSSNLDEEELRKSRETVYRDATGRRIDLVLARKEAKRKLKEKEEEA 185
Query: 619 LLNKIATKGVVQLFNAVRNQQKSIEKEMDR 708
K +GVVQ+ QQK KE++R
Sbjct: 186 RRQKEQQQGVVQV-----RQQKEYLKELER 210
>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 8.5
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +1
Query: 358 DSISKILGSSKPKNKKTLVLSRAKKHSEIVKKEKEEKPSFEVIGEVNEIESKVKK-EEIN 534
D+ K L ++ K T ++ ++ +EI+KKE+E + + E E EI +++ E+
Sbjct: 321 DADRKPLANAYIKALPTSIIVINERDAEIIKKEEELEAAKE---EEEEIWRNMEQLEDTE 377
Query: 535 VEPPAKKVK 561
+ P+K++K
Sbjct: 378 DKKPSKRIK 386
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,148
Number of Sequences: 5004
Number of extensions: 48726
Number of successful extensions: 243
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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