Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_C06
         (955 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        29   4.2  
SB_19262| Best HMM Match : Laminin_EGF (HMM E-Value=0.36)              29   5.5  
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.3  

>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 11/26 (42%), Positives = 21/26 (80%)
 Frame = +1

Query: 355  QNLSEERQNIIRENARLRQRVSTRRS 432
            +++S+ER N++R+  RLR+ VST ++
Sbjct: 1638 ESVSKERDNLLRDVNRLREEVSTNKT 1663


>SB_19262| Best HMM Match : Laminin_EGF (HMM E-Value=0.36)
          Length = 1173

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 463 IGMPSDCMMPMIFVCSRVVSIGHFLLLYFVFLRLSSVNTLV 341
           IG+P  C +    VC  VVS  H + L +   R +++N ++
Sbjct: 877 IGLPPACQVSQNSVCDTVVSFCHAMPLAYNNSRQATINAMI 917


>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1267

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 602 SSLTFPLAQHNPAVSLLNFNALQYRHIVVIGPISKFSSSL*F 477
           SSLTF   Q++PA+S L+   +   H++   P S    SL F
Sbjct: 406 SSLTFIAHQYHPAISYLHRPPVPSSHLLPSSPTSTTQPSLSF 447


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,591,355
Number of Sequences: 59808
Number of extensions: 479040
Number of successful extensions: 1037
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2800542235
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)