Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_C06
         (955 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   7.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   7.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   7.1  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +1

Query: 445 NRLAFQYDPTANYSDDENLDIGPMTTICRY 534
           + + FQ+DP      DEN+++  +  +  Y
Sbjct: 189 DEMIFQWDPDVPLVVDENIELPQLQLVKNY 218


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 376  QNIIRENARLRQRVSTRRSLASYNRLAFQYDPTANYSDDEN 498
            Q++ R+N R  +  S      ++N  + +YD  AN + +E+
Sbjct: 1778 QSMPRQNGRYSRVPSQGGGSGTHNVFSPEYDDPANCAPEED 1818


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 737 LDDIAPKKSCESSY 696
           L+D+  KKSC S Y
Sbjct: 487 LEDLRNKKSCHSGY 500


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 737 LDDIAPKKSCESSY 696
           L+D+  KKSC S Y
Sbjct: 487 LEDLRNKKSCHSGY 500


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 737 LDDIAPKKSCESSY 696
           L+D+  KKSC S Y
Sbjct: 487 LEDLRNKKSCHSGY 500


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,491
Number of Sequences: 438
Number of extensions: 4525
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)