Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_C06
         (955 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30250.1 68417.m04301 AAA-type ATPase family protein contains...    29   4.5  
At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identic...    29   4.5  
At1g35940.1 68414.m04463 AT hook motif-containing protein-relate...    29   4.5  
At4g17710.1 68417.m02645 homeobox-leucine zipper family protein ...    29   6.0  
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf...    28   7.9  

>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 512

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 653 SVPSNNGFSGCGGVSNGSSLTFPLAQHNPAVSLLNFNALQYRHIVVIGPISKFS 492
           S  +NN       V N SS+TF L+ ++    + N   + + H+VV   +  FS
Sbjct: 76  SSSNNNTRLSLTRVPNSSSVTFGLSNNDRITDVFNGVTILWEHVVVQRQVQSFS 129


>At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identical
           to chromomethylase CMT2 [Arabidopsis thaliana]
           GI:14583094
          Length = 1295

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -3

Query: 731 DIAPKKSCESSYCIXRMC*RKWLESGSVPSNNGFSGCGGVSNGSSL 594
           D+ P +S ES         +K   SG +P  + +SGCGG+S G SL
Sbjct: 707 DVVPTESTESIL-------KKKSFSGELPVLDLYSGCGGMSTGLSL 745


>At1g35940.1 68414.m04463 AT hook motif-containing protein-related
           very low similarity to SP|Q9UUA2 DNA repair and
           recombination protein pif1, mitochondrial precursor
           {Schizosaccharomyces pombe}; contains weak hit to
           PF02178: AT hook motif
          Length = 1678

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
 Frame = +1

Query: 499 LDIGPMTTICRYCNALKF------KRETAG-----LCCASGKVKXXXXXXXXXXXXXXFD 645
           LD G  T  C+YC A+ +      K+ET       LCC  G VK                
Sbjct: 326 LDHGDPTYKCKYCGAMMWYDERIRKKETNKESVFTLCCGEGSVKLPFLKESPHLLKNLLS 385

Query: 646 GTDPDSSHF 672
           G  P S H+
Sbjct: 386 GNHPLSKHY 394


>At4g17710.1 68417.m02645 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           HD-Zip homeo domain OCL4 protein (GI:8920425) [Zea
           mays]; contains Pfam PF00046: Homeobox domain and Pfam
           PF01852: START domain
          Length = 709

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +1

Query: 379 NIIRENARLRQRVSTRRSLASYNR--LAFQYDPTANYSDDENLDIGPMTTICRYCNALKF 552
           N+  ENARLRQ +   RS+ S      + +  P  N ++++N+ I           A+  
Sbjct: 184 NLRLENARLRQELDRLRSIVSMRNPSPSQEITPETNKNNNDNMLIAEEEKAIDMELAVSC 243

Query: 553 KRETAGLC 576
            RE A +C
Sbjct: 244 ARELAKMC 251


>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 698

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/57 (28%), Positives = 22/57 (38%)
 Frame = +1

Query: 487 DDENLDIGPMTTICRYCNALKFKRETAGLCCASGKVKXXXXXXXXXXXXXXFDGTDP 657
           D + + IG +T+ CR+ N      +  G  C   K K              FD TDP
Sbjct: 449 DGQAVIIGTLTSDCRFYNVSGHCLQLDGHICLHNKKKSSNKRIIGFQFLLQFDSTDP 505


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,374,127
Number of Sequences: 28952
Number of extensions: 328204
Number of successful extensions: 772
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2295205728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)