Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_C05
         (939 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     31   1.7  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   7.1  
07_03_0697 + 20759176-20759817,20760592-20760708,20761422-207616...    28   9.3  
03_01_0587 - 4349150-4350115                                           28   9.3  

>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -2

Query: 701 RELXRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 573
           R L RGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 22  RVLSRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 408 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--EXTCEQKASKRPXTV 563
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>07_03_0697 +
           20759176-20759817,20760592-20760708,20761422-20761696,
           20761906-20762068,20762293-20762421,20762989-20763713,
           20763853-20764081
          Length = 759

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 582 RFSIGSAPLDEHHKNRRSSQRWRNP 656
           RFS  SAP+D+H + RR      NP
Sbjct: 132 RFSSSSAPVDKHGRRRRKKGGRENP 156


>03_01_0587 - 4349150-4350115
          Length = 321

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -1

Query: 798 AGMRKRHASRXGERRTRYSX*AGXGREPXRAHEGAXQGETPGIFIVLSGFATSDLSVDFC 619
           A +R+R A+    RR R S   G  R P        +    G+ + L  FAT++ +    
Sbjct: 73  AAVRRRRATPAAGRRARPSKYWGVRRRPWGKWAAEIRDPVEGVRVWLGTFATAEAAAHAY 132

Query: 618 DA 613
           DA
Sbjct: 133 DA 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,460,707
Number of Sequences: 37544
Number of extensions: 354011
Number of successful extensions: 858
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)