Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_C05
         (939 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   5.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   5.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   9.2  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 672 YQAFPPGKLPRALSXVPDPCPLTXNTWSAFLPFGKRG 782
           Y AF    LP+ L  +PDP P T    ++ +  G+ G
Sbjct: 573 YCAFWNEFLPK-LKGIPDPXPNTCKVIASSVSAGEEG 608


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +2

Query: 638 SEVAKPDRTIKIPGVSPWXAPSCALXGSRPXPA 736
           S+ A+    +KIP   P   P C+     P  A
Sbjct: 873 SDSAQGRAILKIPSYKPASTPGCSSKNGEPTSA 905


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = -1

Query: 666 IVLSGFATSDLSVDFCDARPGGRSLWKNASNAAFLRXL 553
           ++   +A  D+  + CD +PG     K       L+ L
Sbjct: 478 VMAFAYAFRDMHKELCDGKPGLCDAMKPTKGTELLKYL 515


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,002
Number of Sequences: 438
Number of extensions: 3886
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)