Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_C05
         (939 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27230.1 68418.m03248 expressed protein  ; expression support...    30   2.5  
At3g19830.1 68416.m02512 C2 domain-containing protein low simila...    29   4.4  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   5.9  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   5.9  

>At5g27230.1 68418.m03248 expressed protein  ; expression supported
           by MPSS
          Length = 948

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 696 LPRALSXVPDPCPLTXNTWSAFLPFGKRGAFSYXRVLVXACCT 824
           L  AL   PDP  L  +T  A  P    G + +  ++  A C+
Sbjct: 568 LSNALKCTPDPAKLFLDTSMALCPTNTEGGYEFKMLITSASCS 610


>At3g19830.1 68416.m02512 C2 domain-containing protein low
           similarity to GLUT4 vesicle protein [Rattus norvegicus]
           GI:4193489; contains Pfam profile PF00168: C2 domain
          Length = 666

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 546 KRPXTVKRPRCWRFSIGSAPLDEHHKNRRSSQR 644
           K+P  V+R    +FS+G  PL   +  RR+S+R
Sbjct: 238 KKPDYVQRVEIKQFSLGDEPLSVRNVERRTSRR 270


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 408  PLPRSLTRCARSFGCGERYQLTQRR 482
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 408  PLPRSLTRCARSFGCGERYQLTQRR 482
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,120,201
Number of Sequences: 28952
Number of extensions: 254789
Number of successful extensions: 555
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2246578488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)