Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_C04
(855 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 252 4e-68
SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ... 28 1.9
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 2.6
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 27 3.4
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 27 4.5
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su... 26 5.9
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c... 26 5.9
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 26 5.9
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 26 7.8
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 252 bits (618), Expect = 4e-68
Identities = 111/176 (63%), Positives = 140/176 (79%)
Frame = +1
Query: 310 ISKPAPEWEATAVVNGEFTQLSLSSFKGKYLVFFFYPLDFTFVCPTEILAFSERIEEFRK 489
I KPAP+++ TAVVNG F ++ L+ +KGK++ FYPLDFTFVCPTEI+AFSE +F +
Sbjct: 5 IGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAASKFAE 64
Query: 490 INTEVVACSVDSHFTHLAWINTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLR 669
N +V+ S DS ++HLA+INTPRKEGGLG INIPLL+D +H +++DYGV +ED G R
Sbjct: 65 RNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAFR 124
Query: 670 GLFIIDDKGILRQITMNDLPVGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQDTI 837
GLF+ID KG+LRQIT+NDLPVGRSVDE LRL+ AFQ+ + HGEVCPA W G DTI
Sbjct: 125 GLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWHKGSDTI 180
>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 192
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +2
Query: 365 LNFRYQVSKESTLYFSSIPWILHSYALRKFW----PSLKEL 475
LN R QV + L S I WI HS + K W P +K L
Sbjct: 3 LNRRIQVILPTLLILSFIIWIFHSVMVDKDWRLFMPEIKSL 43
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -2
Query: 494 FIFLNSSILSEK-AKISVGHTNVKSRG*KKNTRYFPLKLDNES*VNS 357
++ + SS+ S + A ++ G+ N K G NT+YF L+N S NS
Sbjct: 174 YLSVPSSMPSRREAGMAYGYQNYKRGGYTPNTQYFEEPLNNTSFPNS 220
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -2
Query: 458 AKISVGHTNVKSRG*KKNTRYFPLKLDNES*VNSPLTTAVASHSGAGFEIIAFVNCS 288
AK NVK+ N++++ D E N P + H GAG+E + C+
Sbjct: 44 AKCKTEFQNVKAICRTYNSKFYMGIFDKEIIDNLPPSVKFICHLGAGYETVDVAACT 100
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 26.6 bits (56), Expect = 4.5
Identities = 24/100 (24%), Positives = 40/100 (40%)
Frame = +1
Query: 421 LDFTFVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLAWINTPRKEGGLGKINIPLL 600
LD ILA +R+ + ++ S+D+ + W +TP + +
Sbjct: 634 LDVIMEANEVILAIQSSALAYRRESQKIYKLSIDTFGEEVPWTSTPET-----LVLLCRQ 688
Query: 601 SDLTHSIAKDYGVYLEDLGHTLRGLFIIDDKGILRQITMN 720
+LT S D+ +T F I DKG+LR + N
Sbjct: 689 FELTRSALVQSHQGTSDVENT----FKIKDKGVLRNVVSN 724
>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 224 IRVTRLEVVMFFRVEREKSIINYNLQKL 307
IRV R EVV+ RV++EK I+ + +++
Sbjct: 63 IRVGRNEVVVVLRVDKEKGYIDLSKRRV 90
>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 565 EGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLRGLF 678
+ G+G I ++ L HS KD V+ E L T LF
Sbjct: 274 QSGIGNIANAIIGGLAHSPFKDLEVWTEVLQDTFLPLF 311
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 178 VLLSVMTCSSSLFDGDSCYSFGSGNVFPGGARK-IDHKLQFTKAM 309
V+ V+T +L D D+ Y+ SGN++ GG K I L + K++
Sbjct: 23 VIYQVLTDRFAL-DEDNFYAKASGNLYLGGTWKGITRNLDYIKSL 66
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +1
Query: 250 NVFPGGARKIDHKLQFTKAMISKPAPEWEATAVVNGEFTQLSLSSFKGKYLVF 408
+ F ID+ ++TKA + KP E + + S +FKG +F
Sbjct: 18 HAFASSVLAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIF 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,513,496
Number of Sequences: 5004
Number of extensions: 74334
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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