Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_C04
(855 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 138 5e-33
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 91 1e-18
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 75 7e-14
06_01_0671 - 4899611-4899829,4900870-4901448 70 2e-12
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 60 2e-09
03_06_0234 - 32535281-32535919,32536121-32536860,32536911-32536953 29 3.6
01_06_1219 - 35490475-35491635 28 8.3
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 138 bits (334), Expect = 5e-33
Identities = 61/107 (57%), Positives = 81/107 (75%), Gaps = 1/107 (0%)
Frame = +1
Query: 529 FTHLAWINTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLRGLFIIDDKGILRQ 708
F+HLAW+ T RK GGLG + PL+SD+T SI+K +GV + D G LRGLFIID +G+++
Sbjct: 212 FSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQH 271
Query: 709 ITMNDLPVGRSVDETLRLVQAFQYT-DNHGEVCPAGWKPGQDTIIPN 846
T+N+L +GRSVDET+R +QA QY DN EVCPAGWKPG ++ P+
Sbjct: 272 STINNLAIGRSVDETMRTLQALQYVQDNPDEVCPAGWKPGDKSMKPD 318
Score = 93.1 bits (221), Expect = 3e-19
Identities = 40/74 (54%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Frame = +1
Query: 307 MISKPAPEWEATAVVNGEFTQLSLSSFKGK-YLVFFFYPLDFTFVCPTEILAFSERIEEF 483
++ AP+++A AV + EF + LS + GK Y++ FFYPLDFTFVCPTEI AFS+R +EF
Sbjct: 69 LVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEF 128
Query: 484 RKINTEVVACSVDS 525
K+NTE++ S+DS
Sbjct: 129 EKLNTEILGVSIDS 142
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 90.6 bits (215), Expect = 1e-18
Identities = 40/72 (55%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
Frame = +1
Query: 634 GVYLEDLGHTLRGLFIIDDKGILRQITMNDLPVGRSVDETLRLVQAFQYT-DNHGEVCPA 810
GV ++ +G LRGLFIID +G+++ T+N+L +GRSVDETLR +QA QY +N EVCPA
Sbjct: 73 GVSIDSVGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPA 132
Query: 811 GWKPGQDTIIPN 846
GWKPG+ ++ P+
Sbjct: 133 GWKPGEKSMKPD 144
Score = 44.0 bits (99), Expect = 2e-04
Identities = 24/46 (52%), Positives = 28/46 (60%)
Frame = +1
Query: 433 FVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLAWINTPRKEG 570
FV EI AFS+R EEF KINTEV+ S+DS L + KEG
Sbjct: 48 FVSSAEITAFSDRYEEFEKINTEVLGVSIDSVGIALRGLFIIDKEG 93
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 74.9 bits (176), Expect = 7e-14
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 7/166 (4%)
Frame = +1
Query: 367 QLSLSSFKGK-YLVFFFYPLDFTFVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLA 543
++ + F G Y++ F +P DFT VC TE+ A + +EF K +++ S D +H
Sbjct: 56 KIRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKD 115
Query: 544 WINTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDL-----GH-TLRGLFIIDDKGILR 705
WI ++ P+++D + K + D GH R L I+ ++
Sbjct: 116 WIKDIEAYKPGNRVTYPIMADPSREAIKQLNMVDPDEKDSNGGHLPSRALHIVGPDKKVK 175
Query: 706 QITMNDLPVGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQDTIIP 843
+ VGR++DE +R V A Q H P WKPG+ +IP
Sbjct: 176 LSFLYPACVGRNMDEVVRAVDALQTAAKHAVATPVNWKPGERVVIP 221
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 70.1 bits (164), Expect = 2e-12
Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
Frame = +1
Query: 370 LSLSSFKGKYLVFFFYPLDFTFVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLAWI 549
+SLS FKG+ +V +FYP D T C + AF + E+F+K EV+ S D +H +
Sbjct: 137 VSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDAASHKEF- 195
Query: 550 NTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLRG--LFIIDDKGILRQITMND 723
+K+ K+ LLSD + + K++GV DL TL G +++D G+++ I N
Sbjct: 196 ---KKK---YKLPFTLLSDEGNKVRKEWGV-PADLFGTLPGRQTYVLDKNGVVQYIYNNQ 248
Query: 724 LPVGRSVDETLRLVQA 771
+ + ETL+++Q+
Sbjct: 249 FQPEKHIGETLKILQS 264
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 60.5 bits (140), Expect = 2e-09
Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 7/166 (4%)
Frame = +1
Query: 367 QLSLSSFKGK-YLVFFFYPLDFTFVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLA 543
++ L F G Y++ F +P DFT VC TE+ + EF K +++ S D +H
Sbjct: 21 KIRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKRGVKLLGFSCDDVESHKD 80
Query: 544 WINTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTL------RGLFIIDDKGILR 705
WI ++ P+++D + + D T R L I+ ++
Sbjct: 81 WIKDIEAYKPGRRVGFPIVADPDREAIRQLNMIDADEKDTAGGELPNRALHIVGPDKKVK 140
Query: 706 QITMNDLPVGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQDTIIP 843
+ GR++ E LR A H P WKPG+ +IP
Sbjct: 141 LSFLFPACTGRNMAEVLRATDALLTAARHRVATPVNWKPGERVVIP 186
>03_06_0234 - 32535281-32535919,32536121-32536860,32536911-32536953
Length = 473
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 263 PGKTLPLPNE*HESPSKSEDEQVITLKSTV 174
P K +P PN E P+K DE+V+T K TV
Sbjct: 126 PEKVVPDPNG--ELPNKDPDEEVVTPKDTV 153
>01_06_1219 - 35490475-35491635
Length = 386
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 275 FRAPPGKTLPLPNE*HESPSKSEDEQVITLKSTVMMIN 162
FR+PP + P P +PS S+ + +TL+ + N
Sbjct: 249 FRSPPAQYAPSPLAGASNPSSSQSRRFVTLRDAMQEEN 286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,379,100
Number of Sequences: 37544
Number of extensions: 438896
Number of successful extensions: 1024
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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