Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_C04
(855 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0) 293 9e-80
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.) 175 1e-63
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012) 172 4e-43
SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 9e-17
SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06) 43 3e-04
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0) 30 2.8
SB_48644| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-21) 29 3.6
SB_29266| Best HMM Match : Glyco_hydro_35 (HMM E-Value=0) 29 3.6
SB_31887| Best HMM Match : PT (HMM E-Value=9.7) 29 4.8
SB_42820| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_19452| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
Length = 265
Score = 293 bits (720), Expect = 9e-80
Identities = 132/184 (71%), Positives = 154/184 (83%), Gaps = 1/184 (0%)
Frame = +1
Query: 286 KLQFTKAMISKPAPEWEATAV-VNGEFTQLSLSSFKGKYLVFFFYPLDFTFVCPTEILAF 462
+ +K I KPAP + TAV +GEF L LS +KGKY+V FFYPLDFTFVCPTEI+AF
Sbjct: 45 RADMSKTAIQKPAPAFSGTAVNKHGEFIDLKLSDYKGKYVVLFFYPLDFTFVCPTEIIAF 104
Query: 463 SERIEEFRKINTEVVACSVDSHFTHLAWINTPRKEGGLGKINIPLLSDLTHSIAKDYGVY 642
S+R++EF+ IN EV+ACSVDS ++HLAW N PRK+GG+G INIP+LSDLT I+KDYGV
Sbjct: 105 SDRVDEFKAINCEVIACSVDSEYSHLAWTNVPRKKGGIGNINIPILSDLTKQISKDYGVL 164
Query: 643 LEDLGHTLRGLFIIDDKGILRQITMNDLPVGRSVDETLRLVQAFQYTDNHGEVCPAGWKP 822
LED G LRGLFIIDDKGILRQIT+NDLPVGRSVDETLRL+QAFQ+TD HGEVCPAGW+P
Sbjct: 165 LEDQGVALRGLFIIDDKGILRQITINDLPVGRSVDETLRLIQAFQFTDKHGEVCPAGWRP 224
Query: 823 GQDT 834
G DT
Sbjct: 225 GADT 228
>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 175 bits (426), Expect(2) = 1e-63
Identities = 79/130 (60%), Positives = 97/130 (74%)
Frame = +1
Query: 157 MLFIIITVLLSVMTCSSSLFDGDSCYSFGSGNVFPGGARKIDHKLQFTKAMISKPAPEWE 336
+LF+ L + + ++ + D D C + G V+P + +H + ++KA ISKPAP WE
Sbjct: 5 VLFVFCFALFAFCSSANKVEDQDQCRVYAGGQVYPERTKISEHAVHWSKAQISKPAPFWE 64
Query: 337 ATAVVNGEFTQLSLSSFKGKYLVFFFYPLDFTFVCPTEILAFSERIEEFRKINTEVVACS 516
TAVVNGEF +L LS F+GKYLVFFFYPLDFTFVCPTEI+AFS+RIEEFR INTEVV CS
Sbjct: 65 GTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFRAINTEVVGCS 124
Query: 517 VDSHFTHLAW 546
VDS FTHLAW
Sbjct: 125 VDSVFTHLAW 134
Score = 87.0 bits (206), Expect(2) = 1e-63
Identities = 40/45 (88%), Positives = 41/45 (91%)
Frame = +1
Query: 658 HTLRGLFIIDDKGILRQITMNDLPVGRSVDETLRLVQAFQYTDNH 792
H GLFIIDDKG+LRQITMNDLPVGRSVDETLRLVQAFQYTD H
Sbjct: 131 HLAWGLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKH 175
>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
Length = 704
Score = 172 bits (418), Expect = 4e-43
Identities = 77/95 (81%), Positives = 85/95 (89%)
Frame = +1
Query: 550 NTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLRGLFIIDDKGILRQITMNDLP 729
N PRK+GG+G INIP+LSDLT I+KDYGV LED G LRGLFIIDDKGILRQIT+NDLP
Sbjct: 3 NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLP 62
Query: 730 VGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQDT 834
VGRSVDETLRL+QAFQ+TD HGEVCPAGW+PG DT
Sbjct: 63 VGRSVDETLRLIQAFQFTDKHGEVCPAGWRPGADT 97
>SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 84.6 bits (200), Expect = 9e-17
Identities = 36/39 (92%), Positives = 38/39 (97%)
Frame = +1
Query: 730 VGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQDTIIPN 846
VGRSVDETLRLVQAFQYTD HGEVCPAGWKPG+DTIIP+
Sbjct: 1 VGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGKDTIIPD 39
>SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)
Length = 160
Score = 43.2 bits (97), Expect = 3e-04
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 12/124 (9%)
Frame = +1
Query: 514 SVDSHFTHLAWINTPRKEG-----GLGKINIPLLSDLTHSIAKDYGVYLED------LGH 660
S D +H W+ K K N P+++D +A G+ D L
Sbjct: 5 SCDDAESHRGWVKDITKYNLEQNKSSAKFNYPIIADERRELAVKLGMVDPDEKDSKGLPL 64
Query: 661 TLRGLFIIDDKGILRQITMNDLPVGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQD-TI 837
T R +FII L+ + GR+ DE LR++ + Q T P WK G D +
Sbjct: 65 TCRAVFIIGPDKKLKLSILYPATTGRNFDEILRVIDSLQLTATKKVATPVDWKLGGDCMV 124
Query: 838 IPNL 849
IP++
Sbjct: 125 IPSI 128
>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
Length = 1075
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 589 IPLLSDLTHSIA--KDYGVYLEDLGHTLRGLFIIDDKGI 699
+P ++DL + IA K G L D GH G+F +D+ I
Sbjct: 392 LPRITDLVNQIAQEKQLGFTLPDSGHYASGIFFLDNDPI 430
>SB_48644| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-21)
Length = 364
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -2
Query: 242 PNE*HESPSKSEDEQVITLKSTVMMINSMFFIMLNCNTA 126
PNE HE+ ++E+ Q + S ++ + + I L CNTA
Sbjct: 267 PNE-HENSDQAENRQKSSQNSMIIAVGVLNLIFLVCNTA 304
>SB_29266| Best HMM Match : Glyco_hydro_35 (HMM E-Value=0)
Length = 568
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +1
Query: 628 DYGVYLEDLGHTLRGLFIIDDKGILRQITMNDLPV 732
D + +E++GH G ++D KGIL +T++++ +
Sbjct: 386 DLDILVENMGHVGYGENMVDPKGILGNVTIDNVQI 420
>SB_31887| Best HMM Match : PT (HMM E-Value=9.7)
Length = 152
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +2
Query: 362 SLNFRYQVSKESTLYFSSIPWILHSYALRK 451
S+ RYQVSK+ T Y S IP I Y + K
Sbjct: 3 SIPTRYQVSKQDTKYPSKIPSIQARYQVSK 32
>SB_42820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 265 HPEKHYHFQTSNTNHHQKVKTNKSLHLKAQL 173
H + YH TS NH K+KT +K L
Sbjct: 46 HKAQEYHKNTSRENHKNKIKTRHVQDMKLYL 76
>SB_19452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 280 RFFALHPEKHYHFQTSNTNHHQKVKTNKSLHLKAQ 176
R F + + Y+ Q S NHHQ +++ K++ A+
Sbjct: 14 RIFLNYCRRSYNDQPSANNHHQSIRSGKAMRRAAK 48
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,077,322
Number of Sequences: 59808
Number of extensions: 514550
Number of successful extensions: 1177
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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