Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_C04
         (855 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    25   0.67 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   4.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   8.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   8.3  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 463 SERIEEFRKINTEVVACSVDSHFTHL 540
           +ER EE+R +  E V CS +S  TH+
Sbjct: 30  AERQEEYRCVICERVYCSRNSLMTHI 55


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +1

Query: 271 RKIDHKLQFTKAMISKPAPEWEATAVVNGEFTQLSLSSFKGKYLVFFFYPLDFTFVC 441
           RK+D +++ T  ++ +  P+  A  + NGE   +          + F   + FT +C
Sbjct: 382 RKLDEEMKRTDELLYQMIPKQVADRLRNGE-NPIDTCEMFDSVSILFSDVVTFTEIC 437


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 268 LHPEKHYHFQTSNTNHHQ 215
           +H   H+H   + T HHQ
Sbjct: 426 IHATPHHHHSHAATPHHQ 443


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 593 GMLIFPKPPSLRGVFI 546
           G+L FP  P++ G+F+
Sbjct: 341 GILGFPSAPTIDGIFL 356


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 593 GMLIFPKPPSLRGVFI 546
           G+L FP  P++ G+F+
Sbjct: 341 GILGFPSAPTIDGIFL 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,174
Number of Sequences: 438
Number of extensions: 4740
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)