Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_C03
         (919 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)              132   3e-31
SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)                    28   9.2  

>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
          Length = 115

 Score =  132 bits (320), Expect = 3e-31
 Identities = 68/115 (59%), Positives = 78/115 (67%)
 Frame = +2

Query: 113 PPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPTYEKLYKEV 292
           PPKKD K  AK+PQ                           LNN VLFDK TY+KLYKEV
Sbjct: 1   PPKKDPKKDAKKPQKAQKPAGSGGGKAKKKKWSKGKVRDK-LNNLVLFDKATYDKLYKEV 59

Query: 293 PQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 457
           P Y+LITP+VVSERLK+RGSLARRAL+EL+ KGLIK+V +HH Q+IYTRATKG D
Sbjct: 60  PSYRLITPSVVSERLKIRGSLARRALLELQSKGLIKEVSKHHSQLIYTRATKGAD 114


>SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)
          Length = 1719

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 200  SWLCRHRILPSSSVFFEAVWPKPSRPSWAASLNWKETIDNKQVAFV 63
            SW CRH ++ S  +  + +    SRP      NWK  +  K + FV
Sbjct: 1035 SWYCRHNLI-SKEILRQLL----SRPYGINEENWKNKLAEKAIDFV 1075


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,090,981
Number of Sequences: 59808
Number of extensions: 332655
Number of successful extensions: 1016
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2657535823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)