Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_C03
         (919 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p pro...   161   2e-39
AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB...   161   2e-39
AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA...   161   2e-39
U03289-1|AAA03464.1|  113|Drosophila melanogaster protein ( Dros...   149   7e-36

>AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p
           protein.
          Length = 117

 Score =  161 bits (390), Expect = 2e-39
 Identities = 81/116 (69%), Positives = 86/116 (74%)
 Frame = +2

Query: 110 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPTYEKLYKE 289
           MPPKKDAK+SAKQPQ                           LNNQVLFDK TYEKLYKE
Sbjct: 1   MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKE 60

Query: 290 VPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 457
           VP YKLITP+VVSERLK+RGSLA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 61  VPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116


>AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB,
           isoform B protein.
          Length = 117

 Score =  161 bits (390), Expect = 2e-39
 Identities = 81/116 (69%), Positives = 86/116 (74%)
 Frame = +2

Query: 110 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPTYEKLYKE 289
           MPPKKDAK+SAKQPQ                           LNNQVLFDK TYEKLYKE
Sbjct: 1   MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKE 60

Query: 290 VPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 457
           VP YKLITP+VVSERLK+RGSLA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 61  VPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116


>AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA,
           isoform A protein.
          Length = 117

 Score =  161 bits (390), Expect = 2e-39
 Identities = 81/116 (69%), Positives = 86/116 (74%)
 Frame = +2

Query: 110 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPTYEKLYKE 289
           MPPKKDAK+SAKQPQ                           LNNQVLFDK TYEKLYKE
Sbjct: 1   MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKE 60

Query: 290 VPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 457
           VP YKLITP+VVSERLK+RGSLA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 61  VPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116


>U03289-1|AAA03464.1|  113|Drosophila melanogaster protein (
           Drosophila melanogasterSevelin ribosomal protein homolog
           gene, partial cds. ).
          Length = 113

 Score =  149 bits (360), Expect = 7e-36
 Identities = 76/112 (67%), Positives = 81/112 (72%)
 Frame = +2

Query: 122 KDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPTYEKLYKEVPQY 301
           KDAK+SAKQPQ                           LNNQVLFDK TYEKLYKEVP Y
Sbjct: 1   KDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVPAY 60

Query: 302 KLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 457
           KLITP+VVSERLK+RGSL +RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 61  KLITPSVVSERLKIRGSLDKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 112


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,684,628
Number of Sequences: 53049
Number of extensions: 476420
Number of successful extensions: 1296
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4505424660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)