Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_C03
(919 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34555.1 68417.m04910 40S ribosomal protein S25, putative 93 2e-19
At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo... 91 7e-19
At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B) 91 7e-19
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 85 8e-17
At4g27630.1 68417.m03971 expressed protein 30 2.5
At1g14500.1 68414.m01719 ankyrin repeat family protein contains ... 29 5.7
At1g63150.1 68414.m07137 pentatricopeptide (PPR) repeat-containi... 28 7.5
At1g62910.1 68414.m07103 pentatricopeptide (PPR) repeat-containi... 28 7.5
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri... 28 10.0
At1g76910.1 68414.m08953 hypothetical protein 28 10.0
>At4g34555.1 68417.m04910 40S ribosomal protein S25, putative
Length = 108
Score = 93.1 bits (221), Expect = 2e-19
Identities = 42/72 (58%), Positives = 55/72 (76%)
Frame = +2
Query: 236 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 415
+NN VLFD+ TY+KL E P++KLITP+++S+RL++ GSLARRA+ EL KG I+ V H
Sbjct: 37 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAH 96
Query: 416 HGQVIYTRATKG 451
Q IYTRAT G
Sbjct: 97 SSQQIYTRATHG 108
>At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E)
ribosomal protein S25, Lycopersicon esculentum,
PIR2:S40089
Length = 108
Score = 91.5 bits (217), Expect = 7e-19
Identities = 40/70 (57%), Positives = 55/70 (78%)
Frame = +2
Query: 236 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 415
+NN VLFD+ TY+KL E P++KLITP+++S+R+++ GSLARRA+ EL KG+I+ V H
Sbjct: 37 VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAH 96
Query: 416 HGQVIYTRAT 445
Q IYTRAT
Sbjct: 97 SSQQIYTRAT 106
>At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)
Length = 108
Score = 91.5 bits (217), Expect = 7e-19
Identities = 41/70 (58%), Positives = 55/70 (78%)
Frame = +2
Query: 236 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 415
+NN VLFD+ TY+KL E P++KLITP+++S+R+++ GSLARRA+ EL KGLI+ V H
Sbjct: 37 VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAH 96
Query: 416 HGQVIYTRAT 445
Q IYTRAT
Sbjct: 97 SSQQIYTRAT 106
>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)
Length = 125
Score = 84.6 bits (200), Expect = 8e-17
Identities = 38/70 (54%), Positives = 53/70 (75%)
Frame = +2
Query: 236 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 415
+NN VLFD+ TY+KL E P++KLITP+++S+RL++ GSLAR+A+ +L KG I+ V H
Sbjct: 53 VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTH 112
Query: 416 HGQVIYTRAT 445
Q I TRAT
Sbjct: 113 SSQQINTRAT 122
>At4g27630.1 68417.m03971 expressed protein
Length = 348
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -2
Query: 429 ITCP*CWTTCLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGL 259
I P CWTT L PF L ++ R + T V+S + +L +SY+ L
Sbjct: 4 ILSPTCWTTLLKHPFILKGFFSMPQLVSRIGVIGVTLMAVLSGFGAVNL-PYSYISL 59
>At1g14500.1 68414.m01719 ankyrin repeat family protein contains
Pfam domain, PF00023: Ankyrin repeat
Length = 436
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -2
Query: 300 YCGTSLYSFSYVGLSN--NTWLFNLSRTFPLDHFFFLALPPPDPSFFFC 160
+C LY+F + + + TW F + + + + +A+ P+P F C
Sbjct: 342 FCCALLYTFCLLPIGSLFTTWFFWIGASLGVSYALAMAIISPNPLLFLC 390
>At1g63150.1 68414.m07137 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 629
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -2
Query: 189 PPPDPSFFFCVF*GCLAEAFASFLGGIFELERN 91
PP PSFF GC +FAS G E+ RN
Sbjct: 24 PPTVPSFFNLCGSGCWERSFASASGDYREILRN 56
>At1g62910.1 68414.m07103 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1133
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -2
Query: 189 PPPDPSFFFCVF*GCLAEAFASFLGGIFELERN 91
PP PSFF GC +FAS G E+ RN
Sbjct: 24 PPTVPSFFNLCGSGCWERSFASASGDYREILRN 56
>At2g17250.1 68415.m01992 expressed protein weak similarity to
Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
[Saccharomyces cerevisiae]
Length = 577
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/47 (27%), Positives = 29/47 (61%)
Frame = +2
Query: 239 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIEL 379
+++ + +KPT +K E L++PA +S+R+K++ + A + + L
Sbjct: 245 SDESISEKPTDKKKKTEKGDSTLLSPATISKRMKLKFTKAWISFLRL 291
>At1g76910.1 68414.m08953 hypothetical protein
Length = 139
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 164 SVFFEAVWPKPSRPSWAASLNWKETIDN 81
S FF+ W + RP L+W ET+ N
Sbjct: 14 SEFFQERWRRKPRPVITRMLHWTETVTN 41
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,885,888
Number of Sequences: 28952
Number of extensions: 230562
Number of successful extensions: 712
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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