Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_C02
         (840 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   29   3.6  

>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 19/84 (22%), Positives = 20/84 (23%)
 Frame = +3

Query: 474  KTPXXKXGXPXXPPXXXXPXXXKXXXXKXXXPPXXXPXKKXGXPPPXKXXXXXXXPPPXX 653
            +TP         PP    P            PP          PPP         PPP  
Sbjct: 902  QTPGGSESPSASPPGGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGG 961

Query: 654  KXXXGXXXFXXXPXXXGGXXXPPP 725
                        P   GG   PPP
Sbjct: 962  SAPPPGGGAPPLPPPPGGSAPPPP 985


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/52 (26%), Positives = 16/52 (30%)
 Frame = +3

Query: 570 PXXXPXKKXGXPPPXKXXXXXXXPPPXXKXXXGXXXFXXXPXXXGGXXXPPP 725
           P   P +    PPP         PPP  +           P   GG   PPP
Sbjct: 315 PPPPPARMGTAPPPPPPSRSSQRPPPPSRGAPPPPSMGMAPPPVGGAAPPPP 366


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,400,061
Number of Sequences: 59808
Number of extensions: 154780
Number of successful extensions: 364
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)