Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_C02
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   4.1  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   4.1  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   4.1  
L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr...    28   9.5  
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/82 (25%), Positives = 23/82 (28%)
 Frame = +3

Query: 480 PXXKXGXPXXPPXXXXPXXXKXXXXKXXXPPXXXPXKKXGXPPPXKXXXXXXXPPPXXKX 659
           P    G P  PP    P   +             P    G PPP +       PPP    
Sbjct: 248 PLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSP 307

Query: 660 XXGXXXFXXXPXXXGGXXXPPP 725
             G       P   GG   PPP
Sbjct: 308 PTG----SLPPPQAGG--SPPP 323


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/82 (25%), Positives = 23/82 (28%)
 Frame = +3

Query: 480 PXXKXGXPXXPPXXXXPXXXKXXXXKXXXPPXXXPXKKXGXPPPXKXXXXXXXPPPXXKX 659
           P    G P  PP    P   +             P    G PPP +       PPP    
Sbjct: 269 PLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSP 328

Query: 660 XXGXXXFXXXPXXXGGXXXPPP 725
             G       P   GG   PPP
Sbjct: 329 PTG----SLPPPQAGG--SPPP 344


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/82 (25%), Positives = 23/82 (28%)
 Frame = +3

Query: 480 PXXKXGXPXXPPXXXXPXXXKXXXXKXXXPPXXXPXKKXGXPPPXKXXXXXXXPPPXXKX 659
           P    G P  PP    P   +             P    G PPP +       PPP    
Sbjct: 254 PLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSP 313

Query: 660 XXGXXXFXXXPXXXGGXXXPPP 725
             G       P   GG   PPP
Sbjct: 314 PTG----SLPPPQAGG--SPPP 329


>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical
           protein ZK688.5b protein.
          Length = 1595

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 162 DLXF*NKANFQPRINS*INEIYFLSDNALL*KFKKKNQN 46
           DL F  + +F+  +   IN I FLSD+  L    K NQN
Sbjct: 220 DLIFRPREHFEQVVRETINNISFLSDSTRLGVSMKWNQN 258


>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical
           protein ZK688.5a protein.
          Length = 1620

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 162 DLXF*NKANFQPRINS*INEIYFLSDNALL*KFKKKNQN 46
           DL F  + +F+  +   IN I FLSD+  L    K NQN
Sbjct: 220 DLIFRPREHFEQVVRETINNISFLSDSTRLGVSMKWNQN 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,531,323
Number of Sequences: 27780
Number of extensions: 150507
Number of successful extensions: 241
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)