Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_C02
         (840 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    29   3.8  
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi...    28   8.9  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    28   8.9  

>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/50 (32%), Positives = 16/50 (32%)
 Frame = +2

Query: 500 PPXXPXXFXPXXXXXXXXKXXKXPXXXPXKKGGXPPPXKXXXXXXXPPPP 649
           PP  P    P        K    P   P   GG PPP         PPPP
Sbjct: 648 PPRVPR---PPPRSAGGGKSTNLPSARPPLPGGGPPPPPPPPGGGPPPPP 694



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 569 PXXXPXKKGGXPPPXKXXXXXXXPPPP 649
           P   P   GG PPP         PPPP
Sbjct: 679 PPPPPPPPGGGPPPPPGGGPPPPPPPP 705


>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
           to proline-rich protein [Arabidopsis thaliana]
           gi|6782442|gb|AAF28388; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 448

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/67 (26%), Positives = 19/67 (28%), Gaps = 3/67 (4%)
 Frame = +1

Query: 502 PXXPPXXXPPXXXKXFXKKXXXPXXXXPKKRXXXPPXKXXXXXXXP---PPPXXXXXXGX 672
           P  PP   PP   K    K   P    P      PP K       P   PPP        
Sbjct: 167 PLPPPLELPPFLKKPCPPKYSPPVEVPPPVPVYEPPPKKEIPPPVPVYDPPPKKEVPPPV 226

Query: 673 XXFXXPP 693
             +  PP
Sbjct: 227 PVYKPPP 233


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/53 (26%), Positives = 15/53 (28%)
 Frame = +3

Query: 567 PPXXXPXKKXGXPPPXKXXXXXXXPPPXXKXXXGXXXFXXXPXXXGGXXXPPP 725
           P    P  +   PPP         PPP  K           P   G    PPP
Sbjct: 373 PAPPGPANQTSPPPPPPPSAAAPPPPPPPKKGPAAPPPPPPPGKKGAGPPPPP 425


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,988,417
Number of Sequences: 28952
Number of extensions: 161686
Number of successful extensions: 472
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)