Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_C01
         (896 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    26   0.35 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   1.9  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        24   1.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   4.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   7.5  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   9.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -3

Query: 399  GMNVPSRSFKVATSFTLPFSLASFSSAILVLYCSSVRSPVSRFCLP 262
            G   PS+   V+ S ++P  +ASF       Y   V  P     LP
Sbjct: 1289 GEGQPSKKVTVSPSASVPAKIASFDDTFTTTYKEDVTLPCLAVGLP 1334


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 589 THNEKLVSPHGAVVNLVLDRFSY 521
           T+N  LV+P+G  V  ++D  SY
Sbjct: 511 TYNRHLVAPNGDHVISLIDEISY 533


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -1

Query: 743 TDDIFGIELLPSFNDIGLWMRKRSKTPSPGLPVKSCRPSPPDR 615
           T +    ELLP  ++ G+  RKR K   P   ++    S   R
Sbjct: 333 TSEALPFELLPLDSEPGMLKRKRQKYHDPSQLLRHVEESDKQR 375


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 804  RYEVFHAEPGVH 769
            +YEVF+  PG+H
Sbjct: 1301 KYEVFNCAPGLH 1312


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 607 PSHRSGGDGLQDFTGR 654
           P H   GDG+ DF+ R
Sbjct: 196 PMHSPPGDGILDFSKR 211



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 674  SKTPSPGLPVKSCRPSPPDRCDGMYST 594
            S + S G+P+K     PP    G  ST
Sbjct: 1097 SSSSSEGVPLKGTAVPPPSGSSGPGST 1123


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 735 YLRYRTVAFLQRHRIVDEEEVENSKPRSASEI 640
           Y RY+    +   R   +EE + +K R  SE+
Sbjct: 140 YCRYQKCLNMGMKREAVQEERQRTKDRDTSEV 171


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,810
Number of Sequences: 336
Number of extensions: 3498
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24927353
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)