Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_C01
(896 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 1e-16
SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0) 74 2e-13
SB_33699| Best HMM Match : Aldo_ket_red (HMM E-Value=3.1) 52 5e-07
SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0) 45 7e-05
SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.025
SB_35757| Best HMM Match : Extensin_2 (HMM E-Value=4.7) 31 0.96
SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042) 29 3.9
SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6) 29 3.9
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 29 5.1
SB_43315| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_47664| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_20520| Best HMM Match : Peptidase_A17 (HMM E-Value=6.16571e-44) 28 8.9
SB_9539| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_2152| Best HMM Match : EGF (HMM E-Value=0) 28 8.9
>SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 84.6 bits (200), Expect = 1e-16
Identities = 46/103 (44%), Positives = 60/103 (58%)
Frame = +2
Query: 362 VATLKLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKN 541
+AT+KL +G MPV+ LGT P V+ AI GYR ID AY Y NEK +G A++
Sbjct: 1 MATVKLNNGLEMPVLGLGTWKSKPGQVENAVKFAIKEGYRHIDCAYAYRNEKEVGDALRE 60
Query: 542 KIDDGTVRRDELFIMGKLWSTFHRTDLVETACRISLADLGLEF 670
+ V R +LFI KLW+T H V + C SL DLGL++
Sbjct: 61 LL-GSVVERKDLFITSKLWNTKHNPKDVRSNCVDSLKDLGLDY 102
Score = 52.8 bits (121), Expect = 4e-07
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +1
Query: 658 GLGVFDLFLIHNPMSLKEGNSSIPK-ISSVIQYSEFDYMDAWFGMEDLVXKGLAKSIGGQ 834
GL DL+LIH P+S ++G+ PK + Y+ D D W ME LV +GL K+IG
Sbjct: 99 GLDYLDLYLIHWPLSFRDGDEFFPKDEQGNVLYAYHDPCDTWKAMEKLVDEGLVKAIGLS 158
Query: 835 QLXSTQI 855
S Q+
Sbjct: 159 NFNSKQV 165
>SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
Length = 407
Score = 73.7 bits (173), Expect = 2e-13
Identities = 52/151 (34%), Positives = 75/151 (49%), Gaps = 5/151 (3%)
Frame = +2
Query: 452 VETAIDMGYRAIDTAYIYGNEKLIGKAIKNKIDDGTVRRDELFIMGKLWSTFHRTDLVET 631
V AI++GYR ID A IYGNE IG+A+ + +G V+R+ELF+ KLW H D V
Sbjct: 71 VRLAIELGYRHIDCAEIYGNEGEIGEALSEVLTEGKVKREELFVTSKLWCDSHHPDDVLP 130
Query: 632 ACRISLADLGLEFXXXXXXXIRCR*RKATVLYRRYHQ----*SNTRSSTTWTPGSAWKTS 799
AC+ +L +L L++ I +K L + + TW A +
Sbjct: 131 ACQATLKNLQLDYLDLYLIHIPVAFKKGVRLPHSIAEGIIGYTPEGVQNTW---QAMEGL 187
Query: 800 XRKAWPRASGVSNFXRPR-SXXLDKASQLPS 889
K +A GVSNF R + L+ AS +P+
Sbjct: 188 VAKGLCKAIGVSNFSVKRLNKLLETASIVPA 218
Score = 36.7 bits (81), Expect = 0.025
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +2
Query: 452 VETAIDMGYRAIDTAYIYGNEKLIGKAIKNKIDDGTVRRDELFIMGKLWST 604
V A ++GYR ID A I+GNE G+A+ + G V+R+E G W +
Sbjct: 18 VRLAAELGYRLIDCAEIHGNE---GEALSGVLTKGKVKREE---CGSTWQS 62
>SB_33699| Best HMM Match : Aldo_ket_red (HMM E-Value=3.1)
Length = 93
Score = 52.4 bits (120), Expect = 5e-07
Identities = 33/94 (35%), Positives = 51/94 (54%)
Frame = +2
Query: 377 LRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNKIDDG 556
L DG +P LG L + T + V A++ GYR IDTA Y NEK +G+A++ +
Sbjct: 3 LSDGYKIPRFGLGLYDLDEKHTKQAVLWALENGYRMIDTAASYNNEKRVGEALR----ES 58
Query: 557 TVRRDELFIMGKLWSTFHRTDLVETACRISLADL 658
V R E++++ K++ T H + A SL+ L
Sbjct: 59 AVPRSEVYLVTKVYHTDHGYEKTMKAYDRSLSAL 92
>SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 48.4 bits (110), Expect = 8e-06
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Frame = +2
Query: 365 ATLKLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYG-NEKLIGKAIKN 541
A + L G MPV+ GTA L T +V+TA++ GYR IDTA Y +E + KAI
Sbjct: 327 ADVLLASGYTMPVMGFGTATLGED-TLSVVKTALETGYRLIDTAQGYPLSEPQVAKAI-- 383
Query: 542 KIDDGTVRRDELFIMGKLWSTFHRTDLVETACRISLADLGLEF 670
D G R+D +FI+ KL + + + +SL L ++
Sbjct: 384 -ADSGIPRKD-IFIITKLHPRYLGYEPTLKSVEMSLRALSTDY 424
>SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
Length = 333
Score = 45.2 bits (102), Expect = 7e-05
Identities = 31/102 (30%), Positives = 54/102 (52%)
Frame = +2
Query: 365 ATLKLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNK 544
+T + DG +P++ LG + + + V A++ GYR IDTA Y NE+ +G+A++
Sbjct: 66 STRIMNDGRKIPLLGLGAHDIHSK---QAVLWALESGYRLIDTASRYHNEQSVGEAVR-- 120
Query: 545 IDDGTVRRDELFIMGKLWSTFHRTDLVETACRISLADLGLEF 670
+ R E++++ K++ T H A SL LGL +
Sbjct: 121 --CSNIPRCEIYVVTKVYFTEHGYKETMDAFYKSLTRLGLGY 160
>SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 36.7 bits (81), Expect = 0.025
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = +2
Query: 461 AIDMGYRAIDTAYIYGNEKLIGKAIKNKIDDGTVRRDELFIMGKL 595
A+ GYR +DTA IY NEK +G A++ ++R+++++ KL
Sbjct: 53 ALKNGYRMLDTADIYQNEKEVGSAVRK----SGLKREDIYVTTKL 93
>SB_35757| Best HMM Match : Extensin_2 (HMM E-Value=4.7)
Length = 211
Score = 31.5 bits (68), Expect = 0.96
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Frame = -3
Query: 600 LHNLPIMKSSSRLTVPSSILFLIAFPMS-FSLP*I*AVSIAL*PISIAVSTISVVNRGGS 424
++N PI S ++V +S + + P+S ++ P +S+ PIS+ S ISV N S
Sbjct: 50 VYNSPISVYISSISVYNSPISVYNLPISVYNSP----ISVYNSPISVYNSPISVYNSPIS 105
Query: 423 KAVPKAMTGMNVPSRSFKVATSFTLPFSLASFSSAILVLYC--SSVRSPVSRFCLPLSKR 250
+ +++ N P + S + S++ ++S I V S SP+S + P+S
Sbjct: 106 VYI-SSISVYNSPISVYNSPISVYIS-SISVYNSPISVYNSPISVYNSPISVYNSPISVY 163
Query: 249 RCPLPGDSSLTEV 211
P+ +SLT V
Sbjct: 164 NSPISVCNSLTSV 176
>SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +1
Query: 607 PSHRSGGDGLQDFTGRPGL--GVFDLFLIHNPMSLKEGNSSIPKISS-VIQYSEFD 765
P R+GG GL + G PG+ G P + + +S PK SS V+ Y ++D
Sbjct: 68 PPGRAGGTGLMGYLGEPGVVGGAGPKGSSGRPGDVGQAGASGPKGSSRVVSYCDYD 123
>SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042)
Length = 815
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 239 SGQRRLDNGKQKRDTGDLTDEQYKTRIAELNEAKLKGSVKEVATLK 376
S R+D K RD L E++ RIA LN K KG ++ A +K
Sbjct: 90 SSASRIDGKKVIRDLAGLLRERFDERIAALNAIK-KGVEEDYAAVK 134
>SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)
Length = 349
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -2
Query: 583 NEKLVSPHGAVVNLVLDRFSYELFVAVNISGIYSSVAHI 467
N++LV+ H VLD+F+ E FVA + + SVA +
Sbjct: 66 NQELVTAHDDAQENVLDQFADEAFVASAFAAMGESVASV 104
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 394 HAGHSLGHSFASSTVNNGNSG 456
H GHS GHSF S V G+SG
Sbjct: 979 HPGHSFGHSFGKSKV-EGSSG 998
>SB_43315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 916
Score = 28.3 bits (60), Expect = 8.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 746 SNTRSSTTWTPGSAWKTSXRKAWPR 820
S +SST W G +W + + WP+
Sbjct: 747 SKLKSSTLWWNGPSWLSETEEGWPK 771
>SB_47664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 746 SNTRSSTTWTPGSAWKTSXRKAWP 817
SN +SS W G W T + WP
Sbjct: 470 SNLKSSALWWNGPHWLTGPEQGWP 493
>SB_20520| Best HMM Match : Peptidase_A17 (HMM E-Value=6.16571e-44)
Length = 655
Score = 28.3 bits (60), Expect = 8.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 746 SNTRSSTTWTPGSAWKTSXRKAWPR 820
S +SST W G +W + + WP+
Sbjct: 588 SKLKSSTLWWNGPSWLSETEEGWPK 612
>SB_9539| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1642
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +2
Query: 236 GSGQRRLDNGKQKRDTGDLT---DEQYKTRIAELNEA 337
G G+ +D+G+ D+G+LT D ++K+ EL+E+
Sbjct: 1367 GGGELTIDSGELTIDSGELTIGGDPEFKSEYRELSES 1403
>SB_2152| Best HMM Match : EGF (HMM E-Value=0)
Length = 1603
Score = 28.3 bits (60), Expect = 8.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 746 SNTRSSTTWTPGSAWKTSXRKAWPR 820
S +SST W G +W + + WP+
Sbjct: 1081 SKLKSSTLWWNGPSWLSETEEGWPK 1105
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,876,532
Number of Sequences: 59808
Number of extensions: 479396
Number of successful extensions: 3950
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3943
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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