Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B24
         (940 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33977| Best HMM Match : CUE (HMM E-Value=0.52)                      30   3.1  
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)               29   5.4  
SB_40598| Best HMM Match : Stap_Strp_toxin (HMM E-Value=2.7)           29   5.4  
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  

>SB_33977| Best HMM Match : CUE (HMM E-Value=0.52)
          Length = 1183

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 81   FENASKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNP 191
            FE   +W  +R++ +  +  KL E +  ++GR    P
Sbjct: 1030 FEKYREWHMKRVLPLFVQDTKLREKIENAEGRTSGGP 1066


>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +2

Query: 89  RIKMAKSKNHTNHNQNRKAH-RNGIKKPRKTRHESTLVHGSKIFNGIKGFARRVT*SQPS 265
           R + ++S+   + +++R++  R+  ++PR+   +       +          R    +  
Sbjct: 206 RSRRSRSRTRRSRSRSRRSRSRSRDRRPRRRSRDRERSRERRSRRSRDKSRSREKSRERG 265

Query: 266 NSRGRLREKLPEKQRPRNE 322
            SRGR  EK PEKQR +++
Sbjct: 266 GSRGRSAEKSPEKQRDKSD 284


>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
          Length = 413

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 95  KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST 193
           K AKSK   NH ++ K  R   KK ++T  +ST
Sbjct: 145 KNAKSKIKRNHGEDNKPKRISTKKRKRTDKDST 177


>SB_40598| Best HMM Match : Stap_Strp_toxin (HMM E-Value=2.7)
          Length = 192

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 101 AKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLVHGSKI 214
           +K+ N TN NQ         K P+KT  ++T+   S +
Sbjct: 153 SKNNNQTNRNQGNTGITENTKSPKKTNIDATVPSDSSV 190


>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 140 KAHRNGIKKPRKTRHES 190
           K HRNGIKKPR  R+ S
Sbjct: 175 KWHRNGIKKPRTNRYPS 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,972,974
Number of Sequences: 59808
Number of extensions: 172747
Number of successful extensions: 513
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2740956230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)