Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B24
         (940 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) simi...    58   1e-08
At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) simi...    57   1e-08
At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein, A...    31   0.83 
At4g35940.1 68417.m05113 expressed protein                             29   5.9  
At3g25950.1 68416.m03234 hypothetical protein                          29   5.9  

>At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) similar
           to 60S ribosomal protein L29 GB:P25886 from (Rattus
           norvegicus)
          Length = 83

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 24/33 (72%), Positives = 28/33 (84%)
 Frame = +2

Query: 95  KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST 193
           +MAKSKNHT HNQ+ KAH+NGIKKPR+ RH  T
Sbjct: 22  EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPT 54


>At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) similar
           to ribosomal protein L29 GI:7959366 [Panax ginseng]
          Length = 61

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 24/32 (75%), Positives = 27/32 (84%)
 Frame = +2

Query: 98  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST 193
           MAKSKNHT HNQ+ KAH+NGIKKPR+ RH  T
Sbjct: 1   MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPT 32


>At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein,
           Arabidopsis thaliana, AJ011845
          Length = 400

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 110 KNHTNHNQNRKAHRNGIKKPRKTRHESTLVH 202
           KNHT H++ R ++  G K  RKT   +T  H
Sbjct: 88  KNHTFHHKMRMSYSEGSKMKRKTHRNTTFGH 118


>At4g35940.1 68417.m05113 expressed protein
          Length = 451

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 116 HTNHNQNRKAHRNGIKKPRKTRHESTLVHGSKIFNGI--KGFARRVT*SQPSNSRGRLRE 289
           H N+N+ R   +  +       +E  L+   +  NG       +R+   QP N R   +E
Sbjct: 188 HNNNNEKRIEKQQPLNGRHNNNNEK-LMEKQQPLNGRHNNNNEKRIEKQQPLNGRHNNKE 246

Query: 290 KLPEKQRP 313
           K  EKQ+P
Sbjct: 247 KQKEKQQP 254


>At3g25950.1 68416.m03234 hypothetical protein
          Length = 251

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 229 FDSIKNFGSMHKGGFVPGLPWLFDTISVSFAVLVMICMIL 110
           +D    +GS    G VP   WL   + + FA+LV I  +L
Sbjct: 195 YDMATFYGSGAADGVVPRWAWLSWLVVIGFAILVSILWVL 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,065,014
Number of Sequences: 28952
Number of extensions: 127746
Number of successful extensions: 375
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2246578488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)