Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B23
         (879 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3LWF3 Cluster: RNA polymerase subunit B; n=1; Bigelowi...    34   4.1  
UniRef50_Q8ILK7 Cluster: Putative uncharacterized protein; n=1; ...    34   4.1  
UniRef50_A4B7H4 Cluster: Putative uncharacterized protein; n=1; ...    33   9.6  

>UniRef50_Q3LWF3 Cluster: RNA polymerase subunit B; n=1;
           Bigelowiella natans|Rep: RNA polymerase subunit B -
           Bigelowiella natans (Pedinomonas minutissima)
           (Chlorarachnion sp.(strain CCMP 621))
          Length = 728

 Score = 34.3 bits (75), Expect = 4.1
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = +2

Query: 257 FTKEVYVIF*ENKKTNENQIALNIMNRKYYL*YEASRQRVY*RQIFR*RKSVSITKLRQI 436
           +TK+ Y++F ENK    N+I LN+  R Y L Y +    +    +    K + ++K+R I
Sbjct: 31  YTKKYYLLF-ENKFIKSNEIELNLFIRNYSLNYFSKNSEMKNNILIFKNKLIELSKIRLI 89


>UniRef50_Q8ILK7 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 1781

 Score = 34.3 bits (75), Expect = 4.1
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 833  DYNNQKNLHYNWNVEISY-MKLIQPFRTQTKKTIYLYTYYVXXRHIXKVYSMHNN 672
            D+N   N +YN+N   +Y    I+      K  I LYTY V  ++   +Y+  NN
Sbjct: 1107 DHNYNYNYNYNYNYNYNYAYDNIELSNKNMKDVINLYTYVVNKKNEKNIYTSTNN 1161


>UniRef50_A4B7H4 Cluster: Putative uncharacterized protein; n=1;
           Alteromonas macleodii 'Deep ecotype'|Rep: Putative
           uncharacterized protein - Alteromonas macleodii 'Deep
           ecotype'
          Length = 170

 Score = 33.1 bits (72), Expect = 9.6
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = -1

Query: 474 RHHNRDLSSN*TIICRNLVILTDFLQRNI 388
           RH N+  +S  T + RNLV++TD L++N+
Sbjct: 33  RHSNKQTNSKVTYVYRNLVLVTDALEKNL 61


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 681,684,562
Number of Sequences: 1657284
Number of extensions: 12553603
Number of successful extensions: 27311
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27295
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 78702453312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)