Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B23
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    27   2.7  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    27   3.5  

>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -3

Query: 709 GVTSLKYTACTITNLMNIVKRDS*NIKTVKQTFVSVNRTVIIIENKIGR 563
           G   + +  C I N  +++  ++  +  V+QT + +N    IIE   GR
Sbjct: 205 GFIQISHADCLILNKTDLISSEA--LSVVRQTILKINCLAKIIETTYGR 251


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 540 HYRSKRSNRPILFSIMITVLFTLTKVCFTVLMF*ESRLTIFIKL 671
           HY S  + RP++FS++  +L  +   C  ++   + + +I IKL
Sbjct: 137 HYISDLNKRPVIFSVIEQILEDMNNFCECMIQL-DDQNSINIKL 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,998
Number of Sequences: 5004
Number of extensions: 60191
Number of successful extensions: 125
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)