Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B22
         (936 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    60   6e-10
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    28   1.6  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   3.8  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    27   3.8  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    26   6.6  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    26   8.8  

>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 59.7 bits (138), Expect = 6e-10
 Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 9/113 (7%)
 Frame = +3

Query: 477 IFLGEFHPVAGPKISCQFPEDYISKE--------VFDSISAYIIPKPQIQKCTMTINALG 632
           IF   F P+ GP ++C+ P   ++           F++IS Y+IPK ++   T+T+    
Sbjct: 22  IFFALFDPLQGPIVACEAPAGSVTNVDGGKNCLLPFETISDYVIPKRELCNKTITVCTNH 81

Query: 633 HKIVGYPIRMDNPRYERNVYLFNICFVC-DSGPRQCSMSCCQKLGEHLTXWRK 788
           ++++G+PI +    YERN  +FN+C +  +     C +   ++L  +L    K
Sbjct: 82  YQVIGHPISIIGSNYERNALIFNMCMIFHEEEDSACYIPLVKRLARNLEVLEK 134


>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +3

Query: 387 SLEPNLDLVSSKIMETRYYEGCGREGPIRCIFLGEFHPVAGPKISCQFPED 539
           ++EP+ ++    I+ETR+  G   + PIR     EF  +    +   +P++
Sbjct: 35  AIEPD-NIAGESIVETRFTGGDSLDEPIRVTLFNEFRAIGEKLVYVLYPKN 84


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 10  LTXHYRESLRFEEFCSRLMNSVRSCISS 93
           +T  Y+E +R  + C R+ ++V  C+S+
Sbjct: 801 ITRVYKEFIRLSKLCMRISSTVVDCVSA 828


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 495 HPVAGPKISCQFPEDYISKEVFDSISAYIIPKPQIQKCTMTI 620
           H    P+I     E Y+++E FDSI+  ++P    +K   TI
Sbjct: 788 HSDVVPEIIELMDEYYLNREDFDSITELVLPADAGEKLMKTI 829


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 424 ILLDTKSKFGSKLPSKSLLVDAFERLCTCICYSSSF 317
           ILLD    + +    K L  D  ++LCT I + + F
Sbjct: 679 ILLDIPQNYDNMSSFKPLAHDVLKKLCTIILFHAGF 714


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = +3

Query: 654 IRMDNPRYERNVYLFNICFVCDSGPRQCSMSCC 752
           I M N RY  N +++ +C++  +   +  +  C
Sbjct: 160 IGMKNNRYSTNPFIYGMCYIIRNNANRILLESC 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,512,913
Number of Sequences: 5004
Number of extensions: 72933
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)