Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B22
         (936 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27)                 32   0.58 
SB_40804| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_27297| Best HMM Match : Bin3 (HMM E-Value=0.074)                    28   9.4  
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_372| Best HMM Match : CBM_2 (HMM E-Value=0.00043)                   28   9.4  

>SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27)
          Length = 1154

 Score = 32.3 bits (70), Expect = 0.58
 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
 Frame = +3

Query: 426 METRYYEGCGREGPIRCIFLGEFHPVAGPKISCQFPEDYISKEVFDSISAYIIPKPQIQK 605
           M + ++ G  ++ PI         P+   ++    P   IS+E  +S+  Y    PQ+QK
Sbjct: 110 MYSAFHIGSPKQPPIEVSIEINSRPLCF-EVDTGCPVTLISEETLNSV--YEGKLPQLQK 166

Query: 606 CTMTINAL-GHKIVGYPIRMDNPRYERNVYLFNICFVCDSGP 728
           CT T+    GHKI          +Y+    +F I  V    P
Sbjct: 167 CTHTLKCFTGHKIEILETVETKIQYQNQTRVFPITVVKGKSP 208


>SB_40804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 486 GEFHPVAGPKISCQFPEDYISKEVFDSISAYIIPKP 593
           G + P++   ISC+  E  +SK + D +S + +  P
Sbjct: 681 GNYRPISLTCISCKLLEHIVSKHIMDHLSRHHLLSP 716


>SB_27297| Best HMM Match : Bin3 (HMM E-Value=0.074)
          Length = 269

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 486 GEFHPVAGPKISCQFPEDYISKEVFDSISAYIIPKP 593
           G + P++   ISC+  E  +SK + D +S + +  P
Sbjct: 224 GNYRPISLTCISCKLLEHIVSKHIMDHLSRHNLLSP 259


>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 461 RPNSMYIPRGIPPCRRPKDFMPVPGRLYFKRS 556
           RP S++I  G P   R  D +P+    YF+ S
Sbjct: 55  RPVSVFITNGFPALARDYDLVPIRATAYFQIS 86


>SB_372| Best HMM Match : CBM_2 (HMM E-Value=0.00043)
          Length = 630

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -3

Query: 622 FMVIVHFCICGLGMMYALIESKTSFEI*SSGNWHEIFGPATGWNSPRNI 476
           + ++ H C+    +M  LI S    +I   GNW   F     +N  +++
Sbjct: 493 YFLLTHLCVLMTAVMIPLIASNVKVDIKILGNWKTGFNGYLRYNVTKDV 541


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,049,553
Number of Sequences: 59808
Number of extensions: 544515
Number of successful extensions: 1683
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1683
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2729039029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)