BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fdpeP02_F_B22 (936 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 24 1.7 DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 23 5.3 AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 22 7.0 AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cycl... 22 7.0 AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 22 9.2 >AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor protein. Length = 1370 Score = 24.2 bits (50), Expect = 1.7 Identities = 10/26 (38%), Positives = 13/26 (50%) Frame = +3 Query: 672 RYERNVYLFNICFVCDSGPRQCSMSC 749 RYE + F +C CD C M+C Sbjct: 738 RYE--AHCFALCHCCDFDACDCEMTC 761 >DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor protein. Length = 459 Score = 22.6 bits (46), Expect = 5.3 Identities = 9/32 (28%), Positives = 16/32 (50%) Frame = +2 Query: 86 FLVDFKNICIVSFFRLPTNYISNNNYSAVCAV 181 F + F +++ P N N+ SA+CA+ Sbjct: 164 FAMPFATYVDINYVEYPQNSKRNSEESAICAM 195 >AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic acetylcholine Apisa7-2 subunit protein. Length = 461 Score = 22.2 bits (45), Expect = 7.0 Identities = 13/40 (32%), Positives = 18/40 (45%) Frame = +3 Query: 339 QVQRRSKASTRRDFDGSLEPNLDLVSSKIMETRYYEGCGR 458 Q Q K RR+ S P+LDL +E ++ GR Sbjct: 357 QSQSSPKFVARREESNSSSPSLDLGKEGGLEAQWSRVLGR 396 >AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cyclase beta-3 protein. Length = 832 Score = 22.2 bits (45), Expect = 7.0 Identities = 7/18 (38%), Positives = 10/18 (55%) Frame = -3 Query: 841 LXVMXKPQWHXRPLERXV 788 + + PQWH R E+ V Sbjct: 608 ITIQEPPQWHTRSTEKRV 625 >AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor protein. Length = 587 Score = 21.8 bits (44), Expect = 9.2 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = -2 Query: 239 CIIQVQRYVAVTR 201 C I + RY+AVTR Sbjct: 157 CAISLDRYLAVTR 169 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 242,182 Number of Sequences: 438 Number of extensions: 5499 Number of successful extensions: 12 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 12 length of database: 146,343 effective HSP length: 58 effective length of database: 120,939 effective search space used: 30597567 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -