Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B22
         (936 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   5.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   7.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   7.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   9.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 672 RYERNVYLFNICFVCDSGPRQCSMSC 749
           RYE   + F +C  CD     C M+C
Sbjct: 738 RYE--AHCFALCHCCDFDACDCEMTC 761


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 86  FLVDFKNICIVSFFRLPTNYISNNNYSAVCAV 181
           F + F     +++   P N   N+  SA+CA+
Sbjct: 164 FAMPFATYVDINYVEYPQNSKRNSEESAICAM 195


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 339 QVQRRSKASTRRDFDGSLEPNLDLVSSKIMETRYYEGCGR 458
           Q Q   K   RR+   S  P+LDL     +E ++    GR
Sbjct: 357 QSQSSPKFVARREESNSSSPSLDLGKEGGLEAQWSRVLGR 396


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 841 LXVMXKPQWHXRPLERXV 788
           + +   PQWH R  E+ V
Sbjct: 608 ITIQEPPQWHTRSTEKRV 625


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 239 CIIQVQRYVAVTR 201
           C I + RY+AVTR
Sbjct: 157 CAISLDRYLAVTR 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,182
Number of Sequences: 438
Number of extensions: 5499
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)