Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B22
         (936 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01730.1 68415.m00101 metallo-beta-lactamase family protein s...    35   0.067
At4g21490.1 68417.m03107 pyridine nucleotide-disulphide oxidored...    31   1.1  
At4g05020.1 68417.m00736 NADH dehydrogenase-related similar to a...    31   1.1  

>At2g01730.1 68415.m00101 metallo-beta-lactamase family protein
           simliar to SP|P79101 Cleavage and polyadenylation
           specificity factor, 73 kDa subunit (CPSF 73 kDa subunit)
           {Bos taurus}; contains Pfam profile PF00753:
           Metallo-beta-lactamase superfamily
          Length = 613

 Score = 35.1 bits (77), Expect = 0.067
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = -1

Query: 906 GSGXRANPRMMMGWLTGRVLIVSESCXSHNGIXDR*NXPSFSXMSNAHQVFDNSSYCTVL 727
           G+G       ++  + G+ ++    C  H G  D    P+FS +S +   FDN+  C ++
Sbjct: 9   GAGQEIGKSCVVVTINGKKIMFD--CGMHMGCDDHNRYPNFSLISKSGD-FDNAISCIII 65

Query: 726 DHYHI 712
            H+H+
Sbjct: 66  THFHM 70


>At4g21490.1 68417.m03107 pyridine nucleotide-disulphide
           oxidoreductase family protein similar to GI:3718005
           alternative NADH-dehydrogenase {Yarrowia lipolytica};
           contains Pfam profile PF00070: Pyridine
           nucleotide-disulphide oxidoreductase
          Length = 568

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 444 EGCGREGPIRCIFLGEFHPVAGPKISCQFPEDYIS 548
           EG  R  P R   LG+F P+ G + + Q P D++S
Sbjct: 491 EGRHRFRPFRYRHLGQFAPLGGEQTAAQLPGDWVS 525


>At4g05020.1 68417.m00736 NADH dehydrogenase-related similar to
           alternative NADH-dehydrogenase [Yarrowia lipolytica]
           GI:3718005, 64 kDa mitochondrial NADH dehydrogenase
           [Neurospora crassa] GI:4753821; contains Pfam profile
           PF00070: Pyridine nucleotide-disulphide oxidoreductase
          Length = 582

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 444 EGCGREGPIRCIFLGEFHPVAGPKISCQFPEDYIS 548
           EG  R  P R   LG+F P+ G + + Q P D++S
Sbjct: 505 EGRHRFRPFRYRHLGQFAPLGGEQTAAQLPGDWVS 539


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,052,975
Number of Sequences: 28952
Number of extensions: 371070
Number of successful extensions: 782
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2236853040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)