Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B21
         (916 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)             122   5e-28
SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.0  
SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)                   29   4.0  
SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_45611| Best HMM Match : p450 (HMM E-Value=0)                        28   9.2  

>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
          Length = 100

 Score =  122 bits (293), Expect = 5e-28
 Identities = 62/103 (60%), Positives = 75/103 (72%)
 Frame = +3

Query: 105 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 284
           +AVGL+KGHK TK             + +P+R KG   K  KFVRD+VREVVG A YEKR
Sbjct: 1   MAVGLQKGHKVTK----------NVTKPKPSRRKGASNKRVKFVRDVVREVVGFAPYEKR 50

Query: 285 AMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 413
            MELL++ KDKRALKF K+RLGTH+R KRKREE+++VLA MRK
Sbjct: 51  VMELLRIGKDKRALKFCKKRLGTHVRGKRKREEITSVLAAMRK 93


>SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
 Frame = +3

Query: 111  VGLRKGHKTT-----KISAGRKGITDKAIRIRPARLKGLQ----TKHS---KFVRDLVRE 254
            V  RKGHK T     +   G+KGI  K  R+  +R    Q     KHS   K +R  +RE
Sbjct: 1109 VSTRKGHKRTENYNDRKRDGKKGIDGKRERLSSSRSDDFQQSKMIKHSHLEKSLRQAMRE 1168

Query: 255  VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNV 395
             + H+       E  KV K K+ ++F K + G  ++   + E+   V
Sbjct: 1169 -LEHSSENSSEEEKRKVRK-KKLVEF-KNKHGLDVKKMDESEKRKKV 1212


>SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)
          Length = 493

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
 Frame = +3

Query: 84  IMAPRFEIAVGLRKGHKTTKISAGRKGITD---KAIRIRPARLKGLQTKHSKFVRDLVRE 254
           + AP+ E  V   K  K  K+S  ++ +     +AI    A LK  + K +  +R++++ 
Sbjct: 267 LSAPQNEEKVETPKSSKKEKLSELKRRLATPMREAIEAGIA-LKQTKKKLATPLREVIKS 325

Query: 255 VVGHAQYEKR-AMELLKVSKDKRALKFLKRRLGTHIRAK 368
                + +K+ A  L K  + K ALK  K+RL T IRA+
Sbjct: 326 KPKLKETKKKLATPLRKEIQSKPALKETKKRLATPIRAE 364


>SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 204 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDK 317
           +GL+    K  + ++ E  GHA Y+K    L KVS+++
Sbjct: 32  RGLRKVSRKHAQRILDETAGHASYKKEHRGLRKVSREQ 69



 Score = 29.5 bits (63), Expect = 4.0
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +3

Query: 204 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 383
           +GL+    K  R ++ E  GH  Y+K    L KVS+ K A + L    G H   K++   
Sbjct: 88  RGLRKVSRKHARRILDETAGHNTYKKEHRGLRKVSR-KHAQRILDGTAG-HCSYKKEHRG 145

Query: 384 L 386
           L
Sbjct: 146 L 146



 Score = 28.7 bits (61), Expect = 6.9
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 204 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKR 377
           +GL+    +  + ++ E  GH  Y+K    L KVS+ K A + L    G +   K  R
Sbjct: 60  RGLRKVSREQAQRIIDETAGHGSYKKEYRGLRKVSR-KHARRILDETAGHNTYKKEHR 116


>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
          Length = 847

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +3

Query: 306 SKDKRALKFLKRRLGTHIRAKRKREELSN 392
           +K  RALKFLK RL   +R KR  E L N
Sbjct: 59  NKSPRALKFLKTRL-QDLRKKRDSETLRN 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,595,985
Number of Sequences: 59808
Number of extensions: 235059
Number of successful extensions: 803
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2645618622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)