Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B21
         (916 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ...   100   1e-21
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)            99   2e-21
At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ...   100   3e-21
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ...    77   1e-14
At1g34590.1 68414.m04299 hypothetical protein                          30   1.9  
At5g28430.1 68418.m03453 hypothetical protein                          28   9.9  
At4g06603.1 68417.m01028 expressed protein                             28   9.9  
At3g60930.1 68416.m06816 expressed protein                             28   9.9  
At3g56790.1 68416.m06316 RNA splicing factor-related contains we...    28   9.9  

>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 112

 Score =  100 bits (240), Expect = 1e-21
 Identities = 54/100 (54%), Positives = 67/100 (67%)
 Frame = +3

Query: 111 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 290
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 291 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 410
           ELLKV KDKRALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101


>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
          Length = 113

 Score =   99 bits (238), Expect = 2e-21
 Identities = 55/100 (55%), Positives = 66/100 (66%)
 Frame = +3

Query: 111 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 290
           VGL KGH  T+          + +  RP   KG  +K + F+R L+REV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRIT 61

Query: 291 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 410
           ELLKV KDKRALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101


>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
           ribosomal protein L36, Arabidopsis thaliana,
           EMBL:AC004684
          Length = 108

 Score = 99.5 bits (237), Expect = 3e-21
 Identities = 55/100 (55%), Positives = 66/100 (66%)
 Frame = +3

Query: 111 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 290
           VGL KGH  TK          +    RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 8   VGLNKGHVVTK----------REQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 57

Query: 291 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 410
           ELLKV KDKRALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 58  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 97


>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 103

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 47/100 (47%), Positives = 61/100 (61%)
 Frame = +3

Query: 111 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 290
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 291 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 410
           ELLKV+         KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62  ELLKVA---------KRKLGTHKRAKRKREEMSSVLRKMR 92


>At1g34590.1 68414.m04299 hypothetical protein
          Length = 820

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 60  FFGSCQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 200
           F    + ++ AP  E A     GH++ +  A + G+TD+A  + PA+
Sbjct: 765 FIAELKDDLKAPALESAPLSPGGHRSVESVADKAGVTDQAGSLLPAK 811


>At5g28430.1 68418.m03453 hypothetical protein
          Length = 486

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 60  FFGSCQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 200
           F    + ++ AP  E A     GH++ +  A   GITD+A  + PA+
Sbjct: 431 FMAELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 477


>At4g06603.1 68417.m01028 expressed protein
          Length = 786

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 60  FFGSCQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 200
           F    + ++ AP  E A     GH++ +  A   GITD+A  + PA+
Sbjct: 731 FMAELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 777


>At3g60930.1 68416.m06816 expressed protein
          Length = 798

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 60  FFGSCQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 200
           F    + ++ AP  E A     GH++ +  A   GITD+A  + PA+
Sbjct: 743 FMSELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 789


>At3g56790.1 68416.m06316 RNA splicing factor-related contains weak
           similarity to U4/U6-associated RNA splicing factor [Homo
           sapiens] gi|2853287|gb|AAC09069
          Length = 206

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
 Frame = +3

Query: 102 EIAVGLRKGHKTTKISAGRKGITDKAIRI--RPARLKGLQTKHSKFVRDLVREVVGHAQ- 272
           E+A+     HK TK    R  +  + I        L  L   ++K  +D+ + ++   Q 
Sbjct: 88  ELAIDTAVAHKQTKGFFLRVDVLGREIDEYGHVINLSTLMVNNNKHKKDVFQNILKPPQP 147

Query: 273 ------YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLA 401
                  EK+   L +V+K+K   K +++ L    ++K K   L  VLA
Sbjct: 148 FKLTKKEEKKLQTLRRVAKEKEKQKMIRQALFEPQKSKVKLSNLMKVLA 196


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,714,334
Number of Sequences: 28952
Number of extensions: 155439
Number of successful extensions: 402
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)