Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_B20
(952 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0290 - 23879064-23880035 31 1.0
07_01_0013 - 99952-100413,100534-100704 31 1.3
02_03_0181 + 16100495-16101025,16101335-16101358 31 1.3
03_01_0522 - 3919120-3919696,3919835-3919919,3919955-3919985,392... 31 1.8
02_02_0140 + 7125914-7126264,7126426-7126677,7126766-7126861,712... 30 3.1
07_01_0349 + 2521006-2522439 29 4.1
02_05_0632 + 30490575-30490808,30490898-30491173,30491287-30491352 29 7.2
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 28 9.5
06_02_0084 - 11547820-11548773 28 9.5
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 28 9.5
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 28 9.5
>05_05_0290 - 23879064-23880035
Length = 323
Score = 31.5 bits (68), Expect = 1.0
Identities = 24/87 (27%), Positives = 35/87 (40%)
Frame = +1
Query: 286 WLSARNYCRQRCMDLVSLETSDENEWVKARIVQDKIKYIWTSGRLCDFKGCNRPDLLPNE 465
WL + C +L S ET D NE V+D + + G + NRP +
Sbjct: 229 WLELHSSCPVCRFELPSEETKDLNEPSNIGRVEDSHEEVRADGPGNVSESSNRPWAIVPW 288
Query: 466 INGWFWTAELQKLAPTTNRQQNDWSEG 546
+N F T E Q + QQ+ + G
Sbjct: 289 LNELFSTREAQNAGGVSTDQQSPHTSG 315
>07_01_0013 - 99952-100413,100534-100704
Length = 210
Score = 31.1 bits (67), Expect = 1.3
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +1
Query: 511 TTNRQQNDWSEGGGIGKPQPDNRELIQGGASEHCVAILNNFYNDGVHWAR--RRLPPPQT 684
TTNR G G G+ Q +R+ +QGG C I G H R R PPQ+
Sbjct: 3 TTNRMLATKPRGDGKGREQGPSRQRLQGGHYAFCTTIA-RLTRMGFHPERHAREGKPPQS 61
Query: 685 IRLR 696
R
Sbjct: 62 FTTR 65
>02_03_0181 + 16100495-16101025,16101335-16101358
Length = 184
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +1
Query: 538 SEGGGIGKPQPDNRELIQGGASEHCVAILNNFYNDGVHWARRRLPPPQTIRLRRKRRPPQ 717
SEG G P P + I GGA+ A + + + R+PP + + RRPPQ
Sbjct: 116 SEGRGSRAPPPLRLKWIDGGATAETAAASSRCWAPSSDGGQSRVPPVLPL-CQLSRRPPQ 174
Query: 718 YVR 726
R
Sbjct: 175 TPR 177
>03_01_0522 -
3919120-3919696,3919835-3919919,3919955-3919985,
3920078-3920158,3920271-3920338,3920645-3920698,
3921023-3922379
Length = 750
Score = 30.7 bits (66), Expect = 1.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 596 PPCISSRLSGCGFPMPPPSDQSFC 525
PP S + S CG +PP S Q FC
Sbjct: 615 PPRPSQQFSACGTMLPPSSSQPFC 638
>02_02_0140 +
7125914-7126264,7126426-7126677,7126766-7126861,
7127013-7127187,7127283-7127363,7127451-7127548,
7127828-7127920,7128607-7128678,7128998-7129117,
7129210-7129260,7130026-7130211,7130355-7130411
Length = 543
Score = 29.9 bits (64), Expect = 3.1
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 658 RRRLPPPQTIRLRRKRRPPQ 717
RRR PP +R RR RRPP+
Sbjct: 75 RRRRAPPMLLRRRRARRPPR 94
>07_01_0349 + 2521006-2522439
Length = 477
Score = 29.5 bits (63), Expect = 4.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 214 HGCFSVHTKKAPEAPGYVHWGTVPGPPP 131
HGC + ++ + YV +GTV PPP
Sbjct: 266 HGCLAWLARRPAGSVAYVSFGTVAAPPP 293
>02_05_0632 + 30490575-30490808,30490898-30491173,30491287-30491352
Length = 191
Score = 28.7 bits (61), Expect = 7.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 617 ATQCSEAPPCISSRLSGCGFPMPPPS 540
AT CS AP +RL G +PPPS
Sbjct: 3 ATACSTAPLLGGARLPAVGAALPPPS 28
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 28.3 bits (60), Expect = 9.5
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 175 APGYVHWGTVPGPPPLAQLIIRVPMSSFSRCVQDPGLPSTN*SKS*GIP 29
AP + G P PPP Q+ ++VP V +PG P + G+P
Sbjct: 75 APSFRPLGAPPPPPPPQQVQVQVPPQYGG--VPNPGYPMAQQMQPPGVP 121
>06_02_0084 - 11547820-11548773
Length = 317
Score = 28.3 bits (60), Expect = 9.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 683 VCGGGRRRRAQWTPSL*KLFKIAT 612
V G GRRRR QW P L +AT
Sbjct: 7 VTGDGRRRRCQWQPRLWPEAAVAT 30
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 28.3 bits (60), Expect = 9.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 753 SCSNLSRCISDVLRRASFSSQTNG 682
+CSNLS I D+ R+ + + Q+NG
Sbjct: 563 ACSNLSLLIDDMRRKLNLNEQSNG 586
>01_01_0588 +
4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 28.3 bits (60), Expect = 9.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 708 ASFSSQTNGLRWWQATS 658
+SFSS NG+++WQ TS
Sbjct: 605 SSFSSHNNGIKFWQPTS 621
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,314,967
Number of Sequences: 37544
Number of extensions: 609424
Number of successful extensions: 2104
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2103
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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