Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B20
         (952 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30530.1 68414.m03735 UDP-glucoronosyl/UDP-glucosyl transfera...    33   0.37 
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea...    31   1.1  
At5g17050.1 68418.m01998 UDP-glucoronosyl/UDP-glucosyl transfera...    30   2.6  
At5g65760.1 68418.m08275 serine carboxypeptidase S28 family prot...    29   4.5  
At1g17270.1 68414.m02103 expressed protein                             29   4.5  
At5g17030.1 68418.m01996 UDP-glucoronosyl/UDP-glucosyl transfera...    29   6.0  
At2g32320.1 68415.m03951 expressed protein  contains Pfam profil...    28   7.9  

>At1g30530.1 68414.m03735 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 453

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 223 RISHGCFSVHTKKAPEAPGYVHWGTVPGPPP 131
           R  HGCF+   K++  +  Y+ +GTV  PPP
Sbjct: 256 RDPHGCFAWMGKRSAASVAYISFGTVMEPPP 286


>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
            family protein contains 5 WD-40 repeats (PF00400);
            similar to WDR protein, form B (GI:14970593) [Mus
            musculus]
          Length = 1589

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
 Frame = +1

Query: 454  LPNEINGWFWTAELQKLAPTTNRQQN-DWSEGGGIGKPQPDNRELIQGGASEHCVAILNN 630
            LP  I+  +W  E + L+   + + N + S  G    P  ++   ++  + +  V    N
Sbjct: 821  LPEFIDAMYWEPEHEVLSDDNDSEYNAEVSSDGARASPCSNSSNELECSSEDSDV---EN 877

Query: 631  FYNDGVHWARRRLPPPQTIRLRRKRR 708
             +    HW RRR  P   +     RR
Sbjct: 878  IHESSYHWKRRRKHPKVNVSTSSGRR 903


>At5g17050.1 68418.m01998 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein similar to UDP glucose:flavonoid
           3-o-glucosyltransferase, Vitis vinifera, EMBL:AF000372
          Length = 460

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 214 HGCFSVHTKKAPEAPGYVHWGTVPGPPP 131
           HGC +   K++  +  Y+ +GTV  PPP
Sbjct: 265 HGCLAWMEKRSSGSVAYISFGTVMTPPP 292


>At5g65760.1 68418.m08275 serine carboxypeptidase S28 family protein
           similar to SP|P42785 Lysosomal Pro-X carboxypeptidase
           precursor (EC 3.4.16.2) (Prolylcarboxypeptidase) (PRCP)
           (Proline carboxypeptidase) {Homo sapiens}; contains Pfam
           profile PF05577: Serine carboxypeptidase S28
          Length = 515

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 436 CNRPDLLPNEINGWFWTAELQKLAPTTNRQQNDWSEGGG 552
           C + D  P+ ++GW W A  + + P ++ Q+N    G G
Sbjct: 353 CFKLDDDPHGLDGWNWQACTEMVMPMSSNQENSMFPGYG 391


>At1g17270.1 68414.m02103 expressed protein
          Length = 564

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +1

Query: 220 YADNKGYFFSWR-DPALRGVEEDWLSARNYCRQRCMDLVSL---ETSDENEWVKARIVQD 387
           + D + +F S++ DP    V+E  L A N  RQ+ + LVSL      + +  + + +V D
Sbjct: 87  FTDTRTFFSSFKLDPMSSRVKESELQALNLLRQQQLALVSLLNRTNFNSSNAISSSVVID 146

Query: 388 KIK 396
            +K
Sbjct: 147 NVK 149


>At5g17030.1 68418.m01996 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein similar to UDP glucose:flavonoid
           3-o-glucosyltransferase from Vitis vinifera,
           EMBL:AF000372
          Length = 459

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 214 HGCFSVHTKKAPEAPGYVHWGTVPGPPPLAQLIIRVPMSS 95
           HGC +   K++  +  Y+ +G V  PPP+  + I   + S
Sbjct: 264 HGCLAWIEKRSTASVAYIAFGRVATPPPVELVAIAQGLES 303


>At2g32320.1 68415.m03951 expressed protein  contains Pfam profile:
           PF04446 family of unknown function (DUF549)
          Length = 243

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -2

Query: 441 VASFEVTKTARCPNVLYLVLDNTRFDPFIFIAGLERY*VHAALSAVVSCAQPVFFD 274
           V SFEV      PN++ + +D   F  F  +   E+     +L+ + SCA  V  +
Sbjct: 9   VKSFEVEDEVMFPNLIIIRIDGRDFSRFSQVHKFEKPNDETSLNLMNSCASSVLVE 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,094,095
Number of Sequences: 28952
Number of extensions: 426975
Number of successful extensions: 1230
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2285480280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)