Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B18
         (927 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              216   2e-56
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              176   2e-44
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)         36   0.061
SB_3221| Best HMM Match : rve (HMM E-Value=3)                          29   4.0  
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)                      29   7.1  
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   28   9.3  
SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)                        28   9.3  

>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score =  216 bits (528), Expect = 2e-56
 Identities = 96/116 (82%), Positives = 109/116 (93%)
 Frame = +1

Query: 73  QPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 252
           +PRG+RTARK  +HRR+Q+W DK +KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQP
Sbjct: 2   KPRGLRTARKLRSHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 61

Query: 253 NSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGV 420
           NSAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDEVL++GFGR+GHAVGDIPG+
Sbjct: 62  NSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGI 117


>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score =  176 bits (428), Expect = 2e-44
 Identities = 81/91 (89%), Positives = 89/91 (97%)
 Frame = +1

Query: 223 EKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAV 402
           ++ GVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDEVL++GFGR+GHAV
Sbjct: 53  QEPGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAV 112

Query: 403 GDIPGVRFKVVKVANVSLLALYKEKKERPRS 495
           GDIPGVRFKVVKVANVSLLAL+KEKKERPRS
Sbjct: 113 GDIPGVRFKVVKVANVSLLALFKEKKERPRS 143


>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
          Length = 302

 Score = 35.5 bits (78), Expect = 0.061
 Identities = 16/39 (41%), Positives = 27/39 (69%)
 Frame = +1

Query: 208 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP 324
           KG+ ++    + K+PNSA RKC  ++L  NGK ++A++P
Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGKTISAYIP 267


>SB_3221| Best HMM Match : rve (HMM E-Value=3)
          Length = 324

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 23/70 (32%), Positives = 34/70 (48%)
 Frame = -2

Query: 518 SLITMYTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRPNPATSTSSFSSMWF 339
           S  T  TYDL  SF+S+  +  + LAT   +K++P +   +  L+P  A   S  S    
Sbjct: 9   SFDTFPTYDLA-SFYSVLCSGDEQLATIKLMKKSPSLFQKSHTLKPR-ANCASIASETLA 66

Query: 338 RQPSRGTNAV 309
           +Q  R  N V
Sbjct: 67  QQCWRSLNTV 76


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 153 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AA 251
           S HG  MEG P  W +S  G  P+ S C S +A
Sbjct: 85  SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117


>SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)
          Length = 488

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
 Frame = -2

Query: 290 MSCTRTHLRMAELGCLASTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHR 126
           M C   +    E+ C    PT  R     T     DA P GL  H   M   L+  +  R
Sbjct: 58  MPCQLDYPNYREMPCQLDCPTTERCPANWTTQLQRDALPTGLPKHR-EMPCQLDYPTTER 116

Query: 125 CSRRWFTCLRAVRIPRG*P 69
           C   W T L+   +P G P
Sbjct: 117 CPANWTTQLQRDALPTGLP 135


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -2

Query: 221  RTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 126
            R +PF+   APPKG  F  VP+W +F N S+  HR
Sbjct: 902  RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936


>SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)
          Length = 471

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -1

Query: 333 TVTGDECGHFLSVLNELYTDAFADGRVGLLSFYTNFLED 217
           T   D+   F    NE      AD R GL+    NF+ED
Sbjct: 159 TTDPDKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,753,006
Number of Sequences: 59808
Number of extensions: 471300
Number of successful extensions: 902
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2693287426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)