Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B17
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    41   3e-04
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    38   0.001
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    36   0.010

>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 30/81 (37%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
 Frame = +3

Query: 267 YGSGSGQQSVTAVEVSDDNNSHWLVRPMTG-----ETCKRGAPIKCNTNIRLQHVATKKN 431
           Y  GS QQ VT     D NN  W+  P  G     E      PI   + +RL H  T +N
Sbjct: 360 YPEGSEQQQVTGYHHKDGNNE-WMFVPTHGVAYNYEENDPMNPILNGSVVRLIHPFTNRN 418

Query: 432 LHSHFFTSPLSGNQ-XVSCYG 491
           LH+H   +PL+     VS YG
Sbjct: 419 LHTHKIPAPLNKRMYEVSGYG 439


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +3

Query: 279 SGQQSVTAVEVSDDNNSHWLVRPMTGET----CKRGAPIKCNTNIRLQHVATKKNLHSHF 446
           SG Q VT  +  D+NN +W++ P          K   P+K    I+L HV T  +L +H 
Sbjct: 374 SGGQQVTGYQFDDENN-YWMILPADHYDPPIEAKLNVPVKNMDYIKLHHVGTNTDLMTHD 432

Query: 447 FTSP 458
             SP
Sbjct: 433 VASP 436


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
 Frame = +3

Query: 267 YGSGSGQQSVTAVEVSDDNNSHWLVRPMTGETCKRG--APIKCNTNIRLQHVATKKNLHS 440
           Y  G+ QQ ++ V+   + N+ W++     +   R     +K  + +RL+HV T + LHS
Sbjct: 338 YPEGTEQQIISLVD-EPNQNALWIIEHEHSQDNNRSNIELLKDGSVVRLRHVMTGRALHS 396

Query: 441 HFFTSPLSGNQ---XVSCYGXXXGEXDSGN 521
           H     +S N      S YG    E D+ +
Sbjct: 397 HEHKPIVSNNDWQLEASAYGGFGFEGDAND 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,721
Number of Sequences: 5004
Number of extensions: 39480
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)