Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B17
         (901 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25110.1 68415.m03004 MIR domain-containing protein similar t...   101   5e-22
At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical ...    28   9.7  

>At2g25110.1 68415.m03004 MIR domain-containing protein similar to
           SP|Q99470 Stromal cell-derived factor 2 precursor
           (SDF-2) {Homo sapiens}; contains Pfam profile PF02815:
           MIR domain
          Length = 218

 Score =  101 bits (243), Expect = 5e-22
 Identities = 48/106 (45%), Positives = 69/106 (65%), Gaps = 2/106 (1%)
 Frame = +3

Query: 267 YGSGSGQQSVTAVEVSDDNNSHWLVRPMTGETCKRGAPIKCNTNIRLQHVATKKNLHSHF 446
           YGSGSGQQSVT      D+NS+W+V+P+ G T K+G  +K    IRLQH+ T+K LHSH 
Sbjct: 61  YGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQGDAVKSGATIRLQHMKTRKWLHSHL 120

Query: 447 FTSPLSGNQXVSCYGXXXGEXDSGNNWTVVC--TMTTWRRKXPVKI 578
             SP+SGN  VSC+G      D+G++W ++   +  TW++   V++
Sbjct: 121 HASPISGNLEVSCFGDDTNS-DTGDHWKLIIEGSGKTWKQDQRVRL 165



 Score = 31.9 bits (69), Expect = 0.60
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 273 SGSGQQSVTAVEVSDDNNSHW-LVRPMTGETCKRGAPIKCNTNIRLQHVATKKNLHSH 443
           SG+ + S    + + D   HW L+   +G+T K+      +  +RLQH+ T   LHSH
Sbjct: 126 SGNLEVSCFGDDTNSDTGDHWKLIIEGSGKTWKQ------DQRVRLQHIDTSGYLHSH 177



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 366 KRGAPIKCNTNIRLQHVATKKNLHSHFFT-SPLSGNQXVSCYGXXXGEXDSGNNWTV 533
           K G  I   + I+L H  TK  LHSH       SG Q V+ +    G  DS + W V
Sbjct: 32  KEGVEITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGF---PGVVDSNSYWIV 85


>At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical to
            MAP3K epsilon protein kinase [Arabidopsis thaliana]
            gi|3549652|emb|CAA12272
          Length = 1368

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 400  LDFSM*LPRRTCIHIFLPHLSLAIKXYHVMXTXXVXG 510
            +DF    P R  +HI  P L +  K Y +  T  V G
Sbjct: 1249 VDFFQSCPERHFVHILEPFLKIITKSYRINKTLAVNG 1285


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,095,006
Number of Sequences: 28952
Number of extensions: 220466
Number of successful extensions: 396
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)