Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B15
         (1018 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    28   2.4  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    27   3.2  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    26   7.4  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   9.8  

>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 13/48 (27%), Positives = 31/48 (64%)
 Frame = +3

Query: 153 KNRIESVFCNINLRIVKQCTQKQH*RLYKYLRRQFHLIEMNWKQQLDT 296
           ++++E+   N N +++K+ +++Q  R YK + ++   IE+N   Q+D+
Sbjct: 742 RSKLEAYHINCN-KVIKEFSKRQTAR-YKIIEKELAQIEVNLVSQIDS 787


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 170 SLLQHKLKNSETMHAETTLTLIQILEKTVSPDRNELEAAVRYLEPCCHHKFHN 328
           S+L+H+  N +    E  +T I  L        N+L  +V YL P  +H+FH+
Sbjct: 322 SILEHEPTNWDDWVQEADVTDIDSLPWHNIRPGNKLFYSVIYLAPGDYHRFHS 374


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 191 KNSETMHAETTLTLIQILEKTVSPDRNELEAAVRYLEPCCH 313
           KN    HA  +  +  I  KT  P R  ++    Y+E  CH
Sbjct: 481 KNYTEHHARVSNVMEMIRNKTRLPPRTIMDLTKLYMEYLCH 521


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -2

Query: 291 LTAASNSFRSGETVFSSICISVNVVSACI 205
           LTA + S  +G ++ S+I ++ N++SA I
Sbjct: 117 LTAYATSAFAGHSLLSTIAVANNIISAAI 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,512
Number of Sequences: 5004
Number of extensions: 36431
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 529254290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)