Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B15
         (1018 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0284 + 28174126-28174247,28174380-28174407,28174729-28174935     29   4.5  
01_05_0681 - 24242485-24242560,24242721-24242785,24242874-242430...    29   7.9  

>01_06_0284 + 28174126-28174247,28174380-28174407,28174729-28174935
          Length = 118

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 316 VVAAWFEVSNCCFQFISIR*NCLLKYLYKR*CCFCVHCFTILKFML 179
           +VA WFEV  CC   ++I    L   L+ R   FC+  F   +F++
Sbjct: 44  LVAMWFEVLMCCTWGMAIA--ALSTALFARQHRFCISVFKCTRFLV 87


>01_05_0681 -
           24242485-24242560,24242721-24242785,24242874-24243029,
           24243073-24243121,24243291-24243366,24243456-24243666,
           24244038-24244160,24244245-24244363,24244439-24244532,
           24245123-24245233,24245336-24245392
          Length = 378

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 137 RFLFFKKQD*VSLLQHKLKNSETMHAETTLTLIQILEKTVSPDRNELE 280
           R+    K++ VS  Q+   NS+ +   T LTL++      +PD +ELE
Sbjct: 164 RYFCLAKREPVSF-QNPSDNSKLLRTPTFLTLVRAGHNRCNPDEDELE 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,024,444
Number of Sequences: 37544
Number of extensions: 272876
Number of successful extensions: 576
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2998973440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)