Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_B14
(1033 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 44 5e-05
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 38 0.002
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.61
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.5
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 24 2.6
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 24 6.5
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 24 6.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 10.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 43.6 bits (98), Expect = 5e-05
Identities = 24/86 (27%), Positives = 25/86 (29%), Gaps = 2/86 (2%)
Frame = +3
Query: 606 PPPPPPPXXXXXXXXPXXXXGGXXXXPPPXPPPXXKK--XXPPPPPXXXSXXKXXXXGGX 779
PPPPPPP P PPP PPP P PP +
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Query: 780 XXXXXPPXXXXXFXFXXXPXPPPXXP 857
PP P PPP P
Sbjct: 371 STGRQPPPLSSSRAVSNPPAPPPAIP 396
Score = 31.9 bits (69), Expect = 0.15
Identities = 21/73 (28%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Frame = +3
Query: 522 PPPPXXGGGXXXFXGXXPPXKKXIFXXXPPPPPPPXXXXXXXXPXXXXGGXXXXPPPXPP 701
PPPP PP + PPPPPP P PP PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSA----PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392
Query: 702 PXXK-KXXPPPPP 737
P + P PP
Sbjct: 393 PAIPGRSAPALPP 405
Score = 30.3 bits (65), Expect = 0.46
Identities = 21/78 (26%), Positives = 21/78 (26%), Gaps = 2/78 (2%)
Frame = +3
Query: 510 GGGXPPPPXXGGGXXXFXGXXPPXKKXIFXXXPPPPPP--PXXXXXXXXPXXXXGGXXXX 683
G PPPP PP PP PPP P P
Sbjct: 357 GRSAPPPPPPRSAPST-GRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTP 415
Query: 684 PPPXPPPXXKKXXPPPPP 737
P P PP P PP
Sbjct: 416 PVPTPPSLPPSAPPSLPP 433
Score = 26.2 bits (55), Expect = 7.5
Identities = 18/72 (25%), Positives = 20/72 (27%), Gaps = 7/72 (9%)
Frame = +3
Query: 606 PPPPPPPXXXXXXXXPXXXXGGXXXXPPPXP-------PPXXKKXXPPPPPXXXSXXKXX 764
PP PP P PPP K+ PPPPP + K
Sbjct: 267 PPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPP 326
Query: 765 XXGGXXXXXXPP 800
G PP
Sbjct: 327 IGNGSSNSSLPP 338
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Frame = +3
Query: 582 KKXIFXXXPPPPP------PPXXXXXXXXPXXXXGGXXXXPPPXPPPXXKKXXPPPPP 737
+K + PPPPP P P GG PPP PPP PPPPP
Sbjct: 725 QKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGP---PPPPPPPGVAGAGPPPPP 779
Score = 31.9 bits (69), Expect = 0.15
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 686 PPPPXPXXKKXXPPPPPP 739
PPPP P PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780
Score = 31.1 bits (67), Expect = 0.26
Identities = 21/62 (33%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Frame = +3
Query: 522 PPPPXXGGGXXXFXGXXP-PXKKXIFXXXPPPPPPPXXXXXXXXPXXXXGGXXXXPPPXP 698
PPPP P P I PPPPPPP G PPP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGV-----------AGAGPPPPPPP 781
Query: 699 PP 704
PP
Sbjct: 782 PP 783
Score = 28.7 bits (61), Expect = 1.4
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 689 PPPXPXXKKXXPPPPPP 739
PPP P PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 668 GXXXXXPPPPXPXXKKXXPPPPPP 739
G PPPP PPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 28.3 bits (60), Expect = 1.9
Identities = 17/39 (43%), Positives = 17/39 (43%)
Frame = +3
Query: 510 GGGXPPPPXXGGGXXXFXGXXPPXKKXIFXXXPPPPPPP 626
GG PPPP G G PP PPPPPPP
Sbjct: 759 GGPPPPPPPPG-----VAGAGPP---------PPPPPPP 783
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.61
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 684 PPPXPPPXXKKXXPPPPP 737
PPP PPP + PPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPP 27
Score = 29.9 bits (64), Expect = 0.61
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 686 PPPPXPXXKKXXPPPPPP 739
PPPP P + PPPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPP 28
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 668 GXXXXXPPPPXPXXKKXXPPPPPP 739
G PPPP PPPPPP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 28.3 bits (60), Expect = 1.9
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = +3
Query: 606 PPPPPPPXXXXXXXXPXXXXGGXXXXPPPXPPPXXKKXXPPPP 734
PPPPPPP P PPP PP KK P
Sbjct: 9 PPPPPPPPGFEPPSQP----------PPPPPPGYVKKRKNKTP 41
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.5
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +3
Query: 606 PPPPPPPXXXXXXXXPXXXXGGXXXXPPPXPPPXXKKXXPPP 731
P PPPPP G PPP P P P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 23.8 bits (49), Expect(2) = 2.6
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 606 PPPPPPP 626
PPPPPPP
Sbjct: 370 PPPPPPP 376
Score = 22.2 bits (45), Expect(2) = 2.6
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = +3
Query: 684 PPPXPPPXXKKXXPPPPP 737
PPP PPP P P
Sbjct: 371 PPPPPPPELLNHSPKSRP 388
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.8 bits (49), Expect(2) = 6.5
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 606 PPPPPPP 626
PPPPPPP
Sbjct: 945 PPPPPPP 951
Score = 20.6 bits (41), Expect(2) = 6.5
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +3
Query: 684 PPPXPPP 704
PPP PPP
Sbjct: 947 PPPPPPP 953
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 23.8 bits (49), Expect(2) = 6.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 606 PPPPPPP 626
PPPPPPP
Sbjct: 1095 PPPPPPP 1101
Score = 20.6 bits (41), Expect(2) = 6.7
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +3
Query: 684 PPPXPPP 704
PPP PPP
Sbjct: 1096 PPPPPPP 1102
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 10.0
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 10/54 (18%)
Frame = +3
Query: 606 PPPPPPP-----XXXXXXXXPXXXXGGXXXXPPPXPPPXXKK-----XXPPPPP 737
PPPPPPP P P PP K PPPPP
Sbjct: 189 PPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPP 242
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,709,634
Number of Sequences: 5004
Number of extensions: 25049
Number of successful extensions: 381
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 539240220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -