Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B13
         (883 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39389| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.18 
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)                 32   0.53 
SB_812| Best HMM Match : FH2 (HMM E-Value=0)                           31   1.6  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)               29   5.0  
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_39389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -2

Query: 594 GXKPPPPXPKXXXXFFXGGGGG 529
           G  PPPP PK    F  GGGGG
Sbjct: 127 GPTPPPPNPKFSIPFIRGGGGG 148



 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 512 GXFGXXPPPPPXKXXXXXLGXGGGGF 589
           G +G  PPPP  K     +  GGGG+
Sbjct: 124 GRWGPTPPPPNPKFSIPFIRGGGGGY 149


>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
          Length = 768

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 16/37 (43%), Positives = 16/37 (43%)
 Frame = -2

Query: 603 PXXGXKPPPPXPKXXXXFFXGGGGGXXPKXPPPXXGG 493
           P  G  PPPP P        G  GG  P  PPP  GG
Sbjct: 656 PEAGPPPPPPPPPG------GQAGGAPPPPPPPLPGG 686


>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1430

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 494 PPXXGGGXFGXXPPPPP 544
           PP  GGG F   PPPPP
Sbjct: 654 PPPPGGGMFPPPPPPPP 670



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/39 (41%), Positives = 16/39 (41%)
 Frame = -2

Query: 621 GXXXXXPXXGXKPPPPXPKXXXXFFXGGGGGXXPKXPPP 505
           G     P  G  PPPP P        GGG    PK PPP
Sbjct: 651 GIPPPPPGGGMFPPPPPPPP------GGGVPGPPKPPPP 683



 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -1

Query: 580 PPXPQXXGXXFXWGGGGXXXKXPPPXPGG 494
           PP P   G      GGG     PPP PGG
Sbjct: 644 PPNPFFGGIPPPPPGGGMFPPPPPPPPGG 672



 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +2

Query: 698 GGXFFXXPPPPPXXKKKXKXXXXGXPRPPP 787
           GG  F  PPPPP           G P+PPP
Sbjct: 658 GGGMFPPPPPPPPG-----GGVPGPPKPPP 682


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -2

Query: 603  PXXGXKPPPPXPKXXXXFFXGGGGGXXPKXPPPXXG 496
            P  G  PPPP P        GGG    P  PPP  G
Sbjct: 947  PPGGNAPPPPPPPGGSAPPPGGGA---PPLPPPPGG 979



 Score = 25.8 bits (54), Expect(2) = 2.5
 Identities = 14/46 (30%), Positives = 14/46 (30%)
 Frame = +2

Query: 494  PPXXGGGXFGXXPPPPPXKXXXXXLGXGGGGFXPXXGXXXFXPKXG 631
            PP   GG     PPPP           GG    P  G     P  G
Sbjct: 933  PPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPG 978



 Score = 22.6 bits (46), Expect(2) = 2.5
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +2

Query: 719  PPPPPXXKKKXKXXXXGXPRPPPLKK 796
            P PPP             P PPP++K
Sbjct: 972  PLPPPPGGSAPPPPPPPPPPPPPMRK 997


>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
          Length = 341

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = -2

Query: 603 PXXGXKPPPPXPKXXXXFFXGGGGGXXPKXPPP 505
           P  G  PPPP P         G GG  P  PPP
Sbjct: 308 PPPGGAPPPPPPPPPP---PPGDGGAPPPPPPP 337


>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1486

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = +2

Query: 698  GGXFFXXPPPPPXXKKKXKXXXXGXPRPPPLKKXXXXFPP 817
            G      PPPPP           G P PPP  +     PP
Sbjct: 1228 GHHMMNMPPPPPAMPPDGPPKFMGLPPPPPGMRPMPPQPP 1267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,033,139
Number of Sequences: 59808
Number of extensions: 168633
Number of successful extensions: 692
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)