Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_B13
(883 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical ... 33 0.36
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 31 0.50
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 31 0.70
AL117203-5|CAB55107.1| 291|Caenorhabditis elegans Hypothetical ... 31 1.1
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 30 1.9
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 30 2.5
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 30 2.5
AF016446-2|AAC24165.1| 70|Caenorhabditis elegans Hypothetical ... 29 3.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 5.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 5.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 5.8
>AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical
protein C02E7.7 protein.
Length = 66
Score = 32.7 bits (71), Expect = 0.36
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +2
Query: 497 PXXGGGXFGXXPPPPPXKXXXXXLGXGGGGF 589
P GGG G PPPPP G GGGG+
Sbjct: 20 PSGGGGGCGCAPPPPP---PACGCGGGGGGY 47
Score = 26.6 bits (56), Expect(2) = 0.64
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -2
Query: 594 GXKPPPPXPKXXXXFFXGGGGGXXPKXPP 508
G PPPP P GGGGG PP
Sbjct: 28 GCAPPPPPPACG----CGGGGGGYAAPPP 52
Score = 24.2 bits (50), Expect(2) = 0.64
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 747 FFFXXGGGGGX*KXXPPXP 691
F F GGGGG PP P
Sbjct: 17 FLFPSGGGGGCGCAPPPPP 35
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 506 GGGXFGXXPPPPPXKXXXXXLGXGGGG 586
GGG G PPPP G GGGG
Sbjct: 45 GGGCGGGCAPPPPPPACGGGCGGGGGG 71
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 506 GGGXFGXXPPPPPXKXXXXXLGXGGGG 586
GGG G PPPP G GGGG
Sbjct: 102 GGGCGGGCAPPPPPPACGGGCGGGGGG 128
Score = 26.2 bits (55), Expect(2) = 0.50
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 543 GGGGGXXPKXPPPXXGG 493
G GGG P PPP GG
Sbjct: 104 GCGGGCAPPPPPPACGG 120
Score = 24.6 bits (51), Expect(2) = 0.50
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -2
Query: 594 GXKPPPPXPKXXXXFFXGGGG 532
G PPPP P GGGG
Sbjct: 51 GCAPPPPPPACGGGCGGGGGG 71
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 31.5 bits (68), Expect = 0.83
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +2
Query: 497 PXXGGGXFGXXPPPPPXKXXXXXLGXGGGG 586
P GGG G PPPPP G GGGG
Sbjct: 20 PSGGGGGCGCAPPPPPPS----PCGCGGGG 45
Score = 28.7 bits (61), Expect(2) = 0.70
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = -2
Query: 594 GXKPPPPXPKXXXXFFXGGGGGXXPKXPP---PXXGG 493
G PPPP P GGGG P+ PP P GG
Sbjct: 28 GCAPPPPPPSPCGC--GGGGGLALPQLPPLSLPSLGG 62
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 495 PPGXGGGXLXXXPPPPXKKXXPXXWGXGGGV 587
P G GGG PPPP P G GGG+
Sbjct: 20 PSGGGGGCGCAPPPPPPS---PCGCGGGGGL 47
Score = 21.8 bits (44), Expect(2) = 0.70
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = -2
Query: 747 FFFXXGGGGGX*KXXPPXP 691
F GGGGG PP P
Sbjct: 17 FLLPSGGGGGCGCAPPPPP 35
>AL117203-5|CAB55107.1| 291|Caenorhabditis elegans Hypothetical
protein Y48C3A.8 protein.
Length = 291
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +2
Query: 506 GGGXFGXXPPPPPXKXXXXXLGXGGGGFXP 595
GGG G PPPPP + GG G P
Sbjct: 159 GGGGGGSVPPPPPAATAAVSMNGGGPGSAP 188
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +2
Query: 719 PPPPPXXKKKXKXXXXGXPRPPPLKKXXXXFPP 817
PPPPP K P PPPL PP
Sbjct: 1359 PPPPPTMSKAPTGVPLPVPPPPPLFSPSMILPP 1391
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = -2
Query: 603 PXXGXKPPPPXPKXXXXFFXGGGGGXXPKXPPPXXG 496
P PPPP P G G P PPP G
Sbjct: 624 PISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPPSG 659
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -2
Query: 585 PPPPXPKXXXXFFXGGGGGXXPKXPPPXXGG 493
PPPP P G G P PPP G
Sbjct: 631 PPPPPPPPMGLPAVGAGAPPPPPPPPPSGAG 661
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = -2
Query: 603 PXXGXKPPPPXPKXXXXFFXGGGGGXXPKXPPPXXG 496
P PPPP P G G P PPP G
Sbjct: 450 PISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPPSG 485
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -2
Query: 585 PPPPXPKXXXXFFXGGGGGXXPKXPPPXXGG 493
PPPP P G G P PPP G
Sbjct: 457 PPPPPPPPMGLPAVGAGAPPPPPPPPPSGAG 487
>AF016446-2|AAC24165.1| 70|Caenorhabditis elegans Hypothetical
protein C02E7.6 protein.
Length = 70
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = +2
Query: 497 PXXGGGXFGXXPPPPPXKXXXXXLGXGGGGFXP 595
P GGG G PPPPP G GGG P
Sbjct: 20 PSGGGGGCGCAPPPPP------ACGCGGGAAPP 46
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 719 PPPPPXXKKKXKXXXXGXPRPPP 787
PPPPP K G P PPP
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPP 259
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 719 PPPPPXXKKKXKXXXXGXPRPPP 787
PPPPP K G P PPP
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPP 280
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 719 PPPPPXXKKKXKXXXXGXPRPPP 787
PPPPP K G P PPP
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPP 265
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,171,984
Number of Sequences: 27780
Number of extensions: 173432
Number of successful extensions: 1123
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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