Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_B13
(883 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 33 0.33
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 31 1.0
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 31 1.3
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t... 30 1.8
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 30 2.4
At1g24150.1 68414.m03047 formin homology 2 domain-containing pro... 30 2.4
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 29 4.1
At5g19810.1 68418.m02354 proline-rich extensin-like family prote... 29 5.4
At1g61080.1 68414.m06877 proline-rich family protein 29 5.4
At1g15830.1 68414.m01900 expressed protein 28 7.2
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 494 PPXXGGGXFGXXPPPPPXKXXXXXLGXGGG 583
PP G G G PPPPP + G GGG
Sbjct: 11 PPRRGYGGRGRSPPPPPPRRGYGGGGGGGG 40
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +2
Query: 719 PPPPPXXKKKXKXXXXGXPRPPPLKKXXXXFPP 817
PPPPP KK G P PPP+ K PP
Sbjct: 409 PPPPPPGKK-----GAGPPPPPPMSKKGPPKPP 436
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = +2
Query: 719 PPPPPXXKKKXKXXXXGXPRPPPLKKXXXXFPP 817
PPPPP KK P PPP KK PP
Sbjct: 395 PPPPPPPKKGPAAPP---PPPPPGKKGAGPPPP 424
Score = 27.1 bits (57), Expect(2) = 2.7
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +2
Query: 644 KKKXXXXPQXXXXTKRGXGGXFFXXPPPPPXXKKKXKXXXXGXPRPP 784
KK P K+G G PPPPP KK G P+ P
Sbjct: 402 KKGPAAPPPPPPPGKKGAG------PPPPPPMSKKGPPKPPGNPKGP 442
Score = 21.0 bits (42), Expect(2) = 2.7
Identities = 8/19 (42%), Positives = 8/19 (42%)
Frame = +2
Query: 494 PPXXGGGXFGXXPPPPPXK 550
PP PPPPP K
Sbjct: 385 PPPPPPSAAAPPPPPPPKK 403
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -2
Query: 603 PXXGXKPPPPXPKXXXXFFXGGGGGXXPKXPPP 505
P G PPPP P GGG P PPP
Sbjct: 673 PLPGGGPPPPPPPPGGGPPPPPGGGPPPPPPPP 705
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Frame = +2
Query: 494 PPXXGGGXF---GXXPPPPPXKXXXXXLGXGGG 583
PP GGG G PPPPP G GGG
Sbjct: 683 PPPPGGGPPPPPGGGPPPPPPPPGALGRGAGGG 715
>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to auxin
down regulated GB:X69640 GI:296442 from [Glycine max];
contains Pfam profile PF00234: Protease inhibitor/seed
storage/LTP family
Length = 297
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = -2
Query: 588 KPPPPXPKXXXXFFXGGGGGXXPKXPPPXXGG 493
+P PP PK GGGGG K PPP GG
Sbjct: 32 RPHPPVPKPPQ---HGGGGGGGSK-PPPHHGG 59
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -2
Query: 594 GXKPPPPXPKXXXXFFXGGGGGXXPKXPP 508
G KPPP K GGGGG K PP
Sbjct: 62 GGKPPPHGGKGGGPPHHGGGGGGGGKSPP 90
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 29.9 bits (64), Expect = 2.4
Identities = 27/96 (28%), Positives = 29/96 (30%)
Frame = +2
Query: 530 PPPPPXKXXXXXLGXGGGGFXPXXGXXXFXPKXGXXXKKKKXXXXPQXXXXTKRGXGGXF 709
PPPPP + G P PK K P T+ G
Sbjct: 660 PPPPPPTSHSGSIRVGPPSTPPPPPPPP--PKANISNAPKPPAPPPLPPSSTRLGA---- 713
Query: 710 FXXPPPPPXXKKKXKXXXXGXPRPPPLKKXXXXFPP 817
PPPPP K P PPPL K PP
Sbjct: 714 -PPPPPPPPLSKTPA------PPPPPLSKTPVPPPP 742
>At1g24150.1 68414.m03047 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 725
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +2
Query: 719 PPPPPXXKKKXKXXXXGXPRPPPLKK 796
PPPPP K K P PPPLKK
Sbjct: 259 PPPPPPPKLKNNGP--SPPPPPPLKK 282
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +2
Query: 719 PPPPPXXKKKXKXXXXGXPRPPPLKKXXXXFPP 817
PPPPP K P PPP K PP
Sbjct: 243 PPPPPPPPIPVKQSATPPPPPPPKLKNNGPSPP 275
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 719 PPPPPXXKKKXKXXXXGXPRPPPLKKXXXXFPP 817
PPPPP + P PPP+++ PP
Sbjct: 25 PPPPPPPPPMRRRAPLPPPPPPPMRRRAPLPPP 57
>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 249
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +2
Query: 701 GXFFXXPPPPPXXKKKXKXXXXGXPRPPPLKKXXXXFPP 817
G + PPPPP + K P PPP K PP
Sbjct: 202 GRVYPPPPPPPQAARSYK---RSPPPPPPSKYGRVYSPP 237
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 710 FXXPPPPPXXKKKXKXXXXGXPRPPPLKKXXXXFPP 817
F PPP P K K P PPPL PP
Sbjct: 490 FAPPPPTPPAFKPLKGSAPPPPPPPPLPTTIAAPPP 525
>At1g15830.1 68414.m01900 expressed protein
Length = 483
Score = 28.3 bits (60), Expect = 7.2
Identities = 29/96 (30%), Positives = 31/96 (32%)
Frame = +2
Query: 494 PPXXGGGXFGXXPPPPPXKXXXXXLGXGGGGFXPXXGXXXFXPKXGXXXKKKKXXXXPQX 673
PP GGG P PP K GGGG G PK G + P
Sbjct: 124 PPIRGGGGEPAIPGAPPPK-------RGGGGEPVIPGAP--PPKRGGGGEPVIPGAPP-- 172
Query: 674 XXXTKRGXGGXFFXXPPPPPXXKKKXKXXXXGXPRP 781
KRG GG PPP + G P P
Sbjct: 173 ---PKRGGGGEPVIPGAPPPKRGGGGEPVIPGAPPP 205
Score = 28.3 bits (60), Expect = 7.2
Identities = 29/96 (30%), Positives = 31/96 (32%)
Frame = +2
Query: 494 PPXXGGGXFGXXPPPPPXKXXXXXLGXGGGGFXPXXGXXXFXPKXGXXXKKKKXXXXPQX 673
PP GGG P PP K GGGG G PK G + P
Sbjct: 140 PPKRGGGGEPVIPGAPPPKR-------GGGGEPVIPGAPP--PKRGGGGEPVIPGAPPP- 189
Query: 674 XXXTKRGXGGXFFXXPPPPPXXKKKXKXXXXGXPRP 781
KRG GG PPP + G P P
Sbjct: 190 ----KRGGGGEPVIPGAPPPKRGGGGEPVIPGAPPP 221
Score = 28.3 bits (60), Expect = 7.2
Identities = 29/96 (30%), Positives = 31/96 (32%)
Frame = +2
Query: 494 PPXXGGGXFGXXPPPPPXKXXXXXLGXGGGGFXPXXGXXXFXPKXGXXXKKKKXXXXPQX 673
PP GGG P PP K GGGG G PK G + P
Sbjct: 156 PPKRGGGGEPVIPGAPPPKR-------GGGGEPVIPGAPP--PKRGGGGEPVIPGAPPP- 205
Query: 674 XXXTKRGXGGXFFXXPPPPPXXKKKXKXXXXGXPRP 781
KRG GG PPP + G P P
Sbjct: 206 ----KRGGGGEPVIPGAPPPKRGGGGEPVIPGAPLP 237
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,703,429
Number of Sequences: 28952
Number of extensions: 190126
Number of successful extensions: 842
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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