Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B12
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    89   1e-18
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    29   0.67 
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.6  
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   8.3  

>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 88.6 bits (210), Expect = 1e-18
 Identities = 41/84 (48%), Positives = 57/84 (67%)
 Frame = +2

Query: 446 KQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAILTLEAK 625
           K+ + +H+ +  +  GK V+PR+AA  DV  I+DIIG+  A+TFVR  YAGN  +T+  K
Sbjct: 110 KKNEISHVFSAHSTVGKGVMPRLAAMFDVMQISDIIGVVSADTFVRPTYAGNVNVTVSTK 169

Query: 626 DPIKVITVRGTAFPAEPLEGGSAA 697
           DPIK++TVR +AF A P  G  AA
Sbjct: 170 DPIKIVTVRASAFDAAPSSGEGAA 193



 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
 Frame = +1

Query: 154 APNSRHLFLSAQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPA 333
           A +S +  ++   R   S L L EH    LSPA+ + + AAK+ GGDV   V G      
Sbjct: 12  ALSSSNFKINCGRRHWFSVLTLLEHQGGNLSPASLSAVEAAKRTGGDVFGFVIGKDSSQI 71

Query: 334 AESIAKA-NGISKVLVAESDVFKGFTAETLXSSDFGYTKTVQIHSYLSTSNCFRK 495
           ++ +AK+ N + KV+  E+  ++    + + +  F   K  +I    S  +   K
Sbjct: 72  SQKVAKSVNDLKKVIYVENPSYEHNIPDQIANVLFENVKKNEISHVFSAHSTVGK 126


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +1

Query: 244 SPATQNTLNAAKKIGGDVS-VLVAGTKCGPAAESIAKANGISKVLVAESDVFKGFTAETL 420
           S  T  T+   +   G ++  +V+G+K   A  S   ANG +   V   +   G   ET+
Sbjct: 511 SGTTSGTVEVVEPTAGTITETIVSGSK---AFTSTFPANGTTSGTVEVVEPTAGTITETI 567

Query: 421 XSSDFGYTKT 450
            S   GYT T
Sbjct: 568 VSGSVGYTST 577



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +1

Query: 253 TQNTLNAAKKIGGDVS-VLVAGTKCGPAAESIAKANGISKVLVAESDVFKGFTAETLXSS 429
           T  T+   +   G ++  +V+G+K      S   ANG +   V   +   G   ET+ S 
Sbjct: 409 TSGTVEVVEPTAGTITKTIVSGSK---TFTSTFPANGTTSGTVEVVEPTAGTITETIVSG 465

Query: 430 DFGYTKT 450
             GYT T
Sbjct: 466 SVGYTST 472



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +1

Query: 253 TQNTLNAAKKIGGDVS-VLVAGTKCGPAAESIAKANGISKVLVAESDVFKGFTAETLXSS 429
           T  T+   +   G ++  +V+G+K      S   ANG +   V   +   G   ET+ S 
Sbjct: 689 TSGTVEVVEPTAGTITETIVSGSK---TFTSTFPANGTTSGTVEVVEPTAGTITETIVSG 745

Query: 430 DFGYTKT 450
             GYT T
Sbjct: 746 SVGYTST 752



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/69 (26%), Positives = 26/69 (37%)
 Frame = +1

Query: 244 SPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKANGISKVLVAESDVFKGFTAETLX 423
           S  T  T+   +   G ++  +     G    S   ANG +   V   +   G   ET+ 
Sbjct: 231 SGTTSGTVEVVEPTAGTITETIVSGSVGYT--STFPANGTTSGTVEVVEPTAGTITETIV 288

Query: 424 SSDFGYTKT 450
           S   GYT T
Sbjct: 289 SGSVGYTST 297



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/66 (25%), Positives = 25/66 (37%)
 Frame = +1

Query: 253 TQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKANGISKVLVAESDVFKGFTAETLXSSD 432
           T  T+   +   G ++  +     G    S   ANG +   V   +   G   ET+ S  
Sbjct: 304 TSGTVEVVEPTAGTITETIVSGSVGYT--STFPANGTTSGTVEVVEPTAGTVTETIVSGS 361

Query: 433 FGYTKT 450
            GYT T
Sbjct: 362 VGYTST 367



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/66 (25%), Positives = 25/66 (37%)
 Frame = +1

Query: 253 TQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKANGISKVLVAESDVFKGFTAETLXSSD 432
           T  T+   +   G ++  +     G    S   ANG +   V   +   G   ET+ S  
Sbjct: 269 TSGTVEVVEPTAGTITETIVSGSVGYT--STFPANGTTSGTVEVVEPTAGTITETIVSGS 326

Query: 433 FGYTKT 450
            GYT T
Sbjct: 327 VGYTST 332


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = -2

Query: 437 PKSEEXRVSAVKPLKTSLSATKTLDIPFALAMDSAAGPHLVPATSTETSPPIFLAAFNVF 258
           P S E   + VK  +T+ S+   L  P A     A GP   P TS  T P   ++  +VF
Sbjct: 517 PASGETSEAGVKETETTTSSESAL--PDA-RKSRARGPVRRPPTSVNTKPSFSVSGIDVF 573


>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -3

Query: 343 WILQQVHIWFQPQALRHHLQFSWQHSMYFGLLEIVPHCC 227
           WIL++ +I+F+   ++   +F + +++   LL    +CC
Sbjct: 2   WILEKKNIFFKIIHIKSSRKFDFSNAIRIVLLPFSSNCC 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,776
Number of Sequences: 5004
Number of extensions: 58216
Number of successful extensions: 184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)