Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B12
         (891 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13745| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   3e-16
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)                 33   0.23 
SB_44204| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_36599| Best HMM Match : PSGP (HMM E-Value=5.5)                      29   6.7  
SB_45459| Best HMM Match : RVT_1 (HMM E-Value=6e-36)                   28   8.8  
SB_22898| Best HMM Match : WD40 (HMM E-Value=5.9e-26)                  28   8.8  
SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1)            28   8.8  
SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)              28   8.8  
SB_26806| Best HMM Match : Annexin (HMM E-Value=0)                     28   8.8  

>SB_13745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 301

 Score = 83.0 bits (196), Expect = 3e-16
 Identities = 37/66 (56%), Positives = 50/66 (75%)
 Frame = +2

Query: 524 LDVSPITDIIGIKDANTFVRTIYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAAID 703
           LDV+P++DI+ I   +TFVRTIYAGNA+ T+++ DPIKV+TVRGTAF A   +GG+   +
Sbjct: 2   LDVAPLSDIMEILSEDTFVRTIYAGNAVTTIKSTDPIKVMTVRGTAFEAASTDGGAVTAE 61

Query: 704 KAPEGD 721
            AP  D
Sbjct: 62  DAPSSD 67


>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
          Length = 1702

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 133 ILLIKMFAPNSRHLFLSAQLRRLQSTLVLAEHNNEVLSPATQNTLN 270
           ++L+    PNS H FL A L  +++ L+L     + + P TQ  +N
Sbjct: 502 LILVPCNTPNSNHWFLLAVLPHMKAVLLLDSRAVDYVKPPTQKAMN 547


>SB_44204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 524

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 497 TVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAIL 610
           T +P+V A+L    +  ++    AN FV  +Y   AI+
Sbjct: 289 TAIPKVVARLGAQKLNGVLHPGTANVFVGVLYGATAIV 326


>SB_36599| Best HMM Match : PSGP (HMM E-Value=5.5)
          Length = 114

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 587 IYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAAIDKAP 712
           ++ GN + T+    P+K +T RGT +       G A ID  P
Sbjct: 44  VFQGNVVNTIRQAPPVKTLTERGT-YEISTGPSGLAIIDLYP 84


>SB_45459| Best HMM Match : RVT_1 (HMM E-Value=6e-36)
          Length = 1346

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 497 TVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAIL 610
           T +P+V ++L    +  ++    AN FV  +Y  +AI+
Sbjct: 278 TAIPKVVSRLGAQKLNRVVHPGTANVFVGALYGASAIV 315


>SB_22898| Best HMM Match : WD40 (HMM E-Value=5.9e-26)
          Length = 490

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +1

Query: 436 GYTKTVQIHSYLSTSNCFRKDGAATSCG 519
           G TKT Q H   ST   F KDGA    G
Sbjct: 194 GDTKTFQSHGCRSTCGMFMKDGARAIAG 221


>SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1)
          Length = 670

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 497 TVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAIL 610
           T +P+V ++L    +  ++    AN FV  +Y  +AI+
Sbjct: 278 TAIPKVVSRLGAQKLNRVVHPGTANVFVGVLYGASAIV 315


>SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
          Length = 440

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = -2

Query: 401 PLKTSLSATKTLDIPFALAMDSAAGPHLVPATSTETSPPIFLAAFNVFWVAGDSTS 234
           P  T + AT T+       +  A  P L P    + S P+F AA NV      STS
Sbjct: 175 PPSTLMGATGTVSTVGVPGLGGAQNP-LGPGPQVQASKPLFPAAQNVNGTVASSTS 229


>SB_26806| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 829

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 211 LVLAEHNNEVLSPATQNTLNAAKKIGGDVSV--LVAGTKCGPAAESIAKAN 357
           LVL  +  +  S A  + LNAA   G  V+V  +VAGT+ GP A+  A  N
Sbjct: 664 LVLISYGQDP-SQAAADKLNAALHDGDTVTVARIVAGTQQGPLADLEASYN 713


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,774,571
Number of Sequences: 59808
Number of extensions: 456945
Number of successful extensions: 1313
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)