Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B12
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81130-12|CAB61027.1|  332|Caenorhabditis elegans Hypothetical p...   110   1e-24
Z79695-8|CAB01967.2|  332|Caenorhabditis elegans Hypothetical pr...   110   1e-24
Z49911-2|CAA90130.1|  681|Caenorhabditis elegans Hypothetical pr...    32   0.63 
U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    29   5.9  
U41038-3|AAK29708.3|  623|Caenorhabditis elegans Cadherin family...    29   5.9  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z81130-12|CAB61027.1|  332|Caenorhabditis elegans Hypothetical
           protein F27D4.1 protein.
          Length = 332

 Score =  110 bits (264), Expect = 1e-24
 Identities = 54/99 (54%), Positives = 75/99 (75%), Gaps = 1/99 (1%)
 Frame = +2

Query: 437 ATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAILTL 616
           A+QKQF FT I A ++AFG+ V+PRVAAKLDVS I+D+  +  A++F RT+YAGNA+  +
Sbjct: 99  ASQKQFNFTAITAGSSAFGRGVIPRVAAKLDVSSISDVTEVHSADSFTRTLYAGNAVKKV 158

Query: 617 EAKDPIKVITVRGTAF-PAEPLEGGSAAIDKAPEGDYKT 730
           ++  PIK++T RGT+F PA+  EGGS A++ AP  D KT
Sbjct: 159 KSTAPIKLLTFRGTSFEPAK--EGGSGAVENAPSADIKT 195



 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 35/74 (47%), Positives = 47/74 (63%)
 Frame = +1

Query: 178 LSAQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKAN 357
           L +   RL STLV+AEH+   L+P T N + AA K+G +VSVLV G      AE +AK N
Sbjct: 13  LISNASRLNSTLVVAEHDETKLAPITLNAITAASKLGNEVSVLVTGANATKVAEQVAKVN 72

Query: 358 GISKVLVAESDVFK 399
           G+ +VLVA+ +  K
Sbjct: 73  GVKRVLVAQDEKLK 86


>Z79695-8|CAB01967.2|  332|Caenorhabditis elegans Hypothetical
           protein F27D4.1 protein.
          Length = 332

 Score =  110 bits (264), Expect = 1e-24
 Identities = 54/99 (54%), Positives = 75/99 (75%), Gaps = 1/99 (1%)
 Frame = +2

Query: 437 ATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAILTL 616
           A+QKQF FT I A ++AFG+ V+PRVAAKLDVS I+D+  +  A++F RT+YAGNA+  +
Sbjct: 99  ASQKQFNFTAITAGSSAFGRGVIPRVAAKLDVSSISDVTEVHSADSFTRTLYAGNAVKKV 158

Query: 617 EAKDPIKVITVRGTAF-PAEPLEGGSAAIDKAPEGDYKT 730
           ++  PIK++T RGT+F PA+  EGGS A++ AP  D KT
Sbjct: 159 KSTAPIKLLTFRGTSFEPAK--EGGSGAVENAPSADIKT 195



 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 35/74 (47%), Positives = 47/74 (63%)
 Frame = +1

Query: 178 LSAQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKAN 357
           L +   RL STLV+AEH+   L+P T N + AA K+G +VSVLV G      AE +AK N
Sbjct: 13  LISNASRLNSTLVVAEHDETKLAPITLNAITAASKLGNEVSVLVTGANATKVAEQVAKVN 72

Query: 358 GISKVLVAESDVFK 399
           G+ +VLVA+ +  K
Sbjct: 73  GVKRVLVAQDEKLK 86


>Z49911-2|CAA90130.1|  681|Caenorhabditis elegans Hypothetical
           protein M28.2 protein.
          Length = 681

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 23/93 (24%), Positives = 41/93 (44%)
 Frame = +1

Query: 109 IKTDFLNKILLIKMFAPNSRHLFLSAQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIG 288
           +K+     +  I+ F  N     +     R+  T V    +++    +T+ T N   K+ 
Sbjct: 200 VKSSTSQALAEIRSFIKNYAEDVIDGTTTRVGLTAV-NNFDSDAFKRSTEVTYNKGVKLI 258

Query: 289 GDVSVLVAGTKCGPAAESIAKANGISKVLVAES 387
           GD+  L    K GP   + A AN + KV++ +S
Sbjct: 259 GDLQTLQMSPKTGPDCRNTA-ANLLEKVIIIQS 290


>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 709 CFINCCRPSLQRLCRECCT 653
           C   CCRP     CR CCT
Sbjct: 83  CGCCCCRPKCCCCCRRCCT 101


>U41038-3|AAK29708.3|  623|Caenorhabditis elegans Cadherin family
           protein 9 protein.
          Length = 623

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +2

Query: 458 FTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAILTLEAKDP 631
           ++  ++P T  G TV+  VA   + +P+T  + + D NT      +GN +L  + + P
Sbjct: 339 YSTTISPTTPIGSTVITVVANSENNTPLTYSL-LADTNTVSIDEVSGNVVLRKKLEKP 395


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 709 CFINCCRPSLQRLCRECCT 653
           C   CCRP     CR CCT
Sbjct: 84  CGCCCCRPRCCCCCRRCCT 102


>Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical
           protein T01B7.8 protein.
          Length = 164

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 709 CFINCCRPSLQRLCRECCT 653
           C   CCRP     CR CCT
Sbjct: 82  CGCCCCRPRCCCCCRRCCT 100


>U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical
           protein C04G6.10 protein.
          Length = 166

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 709 CFINCCRPSLQRLCRECCT 653
           C   CCRP     CR CCT
Sbjct: 83  CGCCCCRPRCCCCCRRCCT 101


>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 709 CFINCCRPSLQRLCRECCT 653
           C   CCRP     CR CCT
Sbjct: 84  CGCCCCRPRCCCCCRRCCT 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,150,013
Number of Sequences: 27780
Number of extensions: 336319
Number of successful extensions: 930
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)