Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B12
         (891 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50940.1 68414.m05727 electron transfer flavoprotein alpha su...    84   1e-16
At4g37800.1 68417.m05349 xyloglucan:xyloglucosyl transferase, pu...    28   7.2  
At3g14910.1 68416.m01885 expressed protein                             28   7.2  
At3g22490.1 68416.m02843 late embryogenesis abundant protein, pu...    28   9.6  
At1g17460.1 68414.m02141 myb family transcription factor contain...    28   9.6  

>At1g50940.1 68414.m05727 electron transfer flavoprotein alpha
           subunit family protein contains Pfam profile: PF00766
           electron transfer flavoprotein, alpha subunit
          Length = 363

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 40/85 (47%), Positives = 60/85 (70%), Gaps = 2/85 (2%)
 Frame = +2

Query: 443 QKQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAILTLE- 619
           ++Q  ++HILA +++FGK +LPRVAA LDVSPITD++ I  ++ F+R IYAGNA+ T+  
Sbjct: 120 RQQGDYSHILASSSSFGKNILPRVAALLDVSPITDVVKILGSDQFIRPIYAGNALCTVRY 179

Query: 620 -AKDPIKVITVRGTAFPAEPLEGGS 691
               P  ++T+R T+FP  P+   S
Sbjct: 180 TGAGPC-MLTIRSTSFPVTPITANS 203



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
 Frame = +1

Query: 124 LNKILLIKMFAPNSRHLFLSAQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIG--GDV 297
           L K   +   AP S  + +++ L R  STL+LAEH +  + P T +T+ AA  +G    +
Sbjct: 10  LTKNKFVASNAPRSISISITS-LSRCISTLILAEHESGTIKPQTVSTVVAANSLGESSSI 68

Query: 298 SVLVA--GTKCGPAAESIAKAN-GISKVLVAESDVFKGFTAE 414
           S+L+A  G+    AA   A  +  +S+VLVA+SD F+   AE
Sbjct: 69  SLLLAGSGSSLQEAASQAASCHPSVSEVLVADSDKFEYSLAE 110


>At4g37800.1 68417.m05349 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           N-terminal partial sequence of endo-xyloglucan
           transferase GI:2244732 from [Gossypium hirsutum]
          Length = 293

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 334 QQVHIWFQPQALRHHLQFSWQHSMYFGLLEIVP 236
           Q+V++WF P    H    SW H      ++ VP
Sbjct: 139 QRVNLWFDPSRDFHEYAISWNHLRIVFYVDNVP 171


>At3g14910.1 68416.m01885 expressed protein
          Length = 455

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 241 LSPATQNTLNAAK-KIGGDVSVLVAGTKCGPAAESIAKANGISKVLVAESDVFK 399
           LSP    ++ A +  +  DV V+VAGT CG         + I K +V +S + K
Sbjct: 71  LSPIEAESITAIEWLVFDDVRVVVAGTSCGYLLVYSVTGDLIHKQIVHQSRILK 124


>At3g22490.1 68416.m02843 late embryogenesis abundant protein,
           putative / LEA protein, putative similar to LEA protein
           in group 5 (AtECP31) [Arabidopsis thaliana] GI:1526422;
           contains Pfam profile PF04927: Seed maturation protein
          Length = 262

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 537 GDTSSLAATRGSTVFPKAVAGAKI 466
           GDT+ LAA RG TV    V GA++
Sbjct: 75  GDTTDLAAERGVTVAQTDVPGARV 98


>At1g17460.1 68414.m02141 myb family transcription factor contains
           Pfam PF00249: Myb-like DNA-binding domain
          Length = 604

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = +1

Query: 232 NEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKANGISKVLVAESDVFKGFTA 411
           N  + P T  T+N +K IGGD   + A +K G   E  A     S    A  D  KG   
Sbjct: 244 NSCVVPTTTLTINDSKLIGGDQDAIDAFSK-GTVDEETATE---SIDTPASPDGIKG--- 296

Query: 412 ETLXSSDFGYTKTVQIHSYLSTSNCFR-KDGAA 507
               S+DFG++       + S +  F  +DG+A
Sbjct: 297 ---HSNDFGHSPVETFVDHYSGNEDFEGEDGSA 326


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,240,412
Number of Sequences: 28952
Number of extensions: 308372
Number of successful extensions: 896
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)